taf12 (taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731)


Basic Information

Item Value
gene id taf12
gene name taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24836086 ~ 24839787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261009.1
ATCCCCTAGTTCCACAGACAAAGtgtaagcctagtcctagactaaaatgtaaatctgagccgtttaaacaaacaaacaaacttgcACTGACCTCAAAATttatcagtgcctttgtttttcctaagcatgttttttttaattaaattacttaaatgacctaattgaactatggcctaatcctggcttattCTAAACCCTGTCTGTAAAACCAGGCCTATTTGTGTCAACATGAGATTAGTGTGATGATATAATTTATCTTGTTTGTGCAAACATTTTCCAGCTCCTGGTTTGACGGTGTAAATcctttcaattttaatatataatatacccCTTAAACCGTAATCTCACATCGAGAAAGCTTTTAggcagttaaaataaaataaagatttccattgtaaattcatattattctgttttgcttttcaaatTGAGAGAAGAATTTTAACTATTGTCCCCATATAACGTAACGTAAACTCAAAACATTCCTTTAGTACAAAATGCTAATTTGGAATAGACGACGTCtaggcttttattttgtaaaacacgTTGTTTGAGATCTCGCGATAATTCAGCAGAGCTCCGTTCGCCAGAAGAGGCGCCTGTAGTAGAAGGAATATCAACATCAACTTAAATTGGCTTTTGAATATTTCCAGCTCATAAACGTCGAAGATGGGTAGATAATACAGAATTTGTCGGATCAGctaAACAGATCGCACTCTGGTTTTGAAGAGGCTCCTGACAGATATATCTTGACTAGCATAGTATGACCCAGTACCCACCACAGACCAGTCGCTCGAACTTCTACACTGTTGTGAAAGCAGAAGCCTCTTCAACGCCACCCATCTCCACCAACATGGCCAACAGCACCGTCGTCCCCGGGAAAGTTCCAGGCACCCCCGGTCCCGCTGGAAGACTGAGCCCTGAAGGCACTCAGGTGCTTAGTAAGAAGAAACTGCAGGATCTTGTGAGAGAAATTGATCCTAATGAGCAACTCGATGAAGATGTGGAGGAGATGCTCTTGCAGATTGCCGATGACTTCATCGAGAGCGTGGTGATGGCGGCGTGTCAGCTTGCCCGACACAGGAAGTCAAACACTCTTGAAGTGAAAGATGTCCAGCTACACCTGGAACGACAGTGGAACATGTGGATTCCTGGTTTTGGTTCAGATGAGATCCGACCGTATAAGAAGGCTTGCACCACAGAAGCTCACAAACAGAGAATGGCATTGATCCGCAAAACAACCAAAAAGTAGCAAGATGGGAAGCAccaataaacttttttttttttttttttttttttttttttctgcaagttTTGGAAGTGGAGAGGGATTGAACCtatatatgttatgttaatCAGAGAGGCAGAATGCGTTGTACTATTTACAGTACGGTTCAATTTTTGCATTCAAAAGGTGCATAGGAAGTGACACAAATTGTCTGTACAGTTCACTTTGTGACACAAACCACcatgtgaacattttatttggGCACCTTGGTCTCTGACTTGGTGCTATACTGgggtttattatattatagagtcTCACAGGCTTCTGTGAAAAAACAGTTGTTTATTGTTTCTCCCACAAACcatattttcattcatatttcgTGTATAGCTGAATCGTCATGCAGTCACACAACTTTTACTCAGCTGGCATTAATAGCTATGCACAATTACAATCATCACGTGTCTGATTTGTTCATAGTGTTCGGTGTTATAGACTTCATCACTTAagtaatatttagtattatagAGGAAATCTTTAGTGTGTGACTTTCTAAAGGCAAACAGTCATTTTTACCGGAGAAATAAATACCACTTTCCCCATTTAATTCATTGCATTGGAGCTAGTAAGAATAATACAGAATGGTTAATTGGTTGGAGAGttatatatgtgtaatgtaTGGGAAATTGGTGCATAAACCCTTCCTACTGTGGGTTTGTGGGCAGATTTTCTGTGGAGTTAAACTGAGTATAAACTTTTTTTGCCATGTATCACAGTGTTTTACAGTCTCTTgtttttcatgaataaaaaaacaactaattgtGATTTA

Function

symbol description
taf12 Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF12 (TATA-box binding protein associated factor 12).

NR:

description
transcription initiation factor TFIID subunit 12 isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03126 TAF12; transcription initiation factor TFIID subunit 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261009.1 True 2057 mRNA 0.38 6 24836086 24839787

Neighbor

gene id symbol gene type direction distance location
ptprub ptprub coding downstream 27416 24626594 ~ 24808670 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding downstream 405200 24372103 ~ 24430886 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding downstream 519954 24311489 ~ 24316132 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding downstream 637432 24196697 ~ 24198654 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding downstream 681664 24134883 ~ 24154422 (-)
ctps1b ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321 coding upstream 142 24839929 ~ 24846153 (-)
LOC122360137 LOC107755513,LOC107705663,LOC107556091,LOC107704976,LOC107588498 coding upstream 53059 24892846 ~ 24906521 (-)
eva1ba eva1ba,LOC107700680,LOC107556086,LOC107734091 coding upstream 180929 25020716 ~ 25033341 (-)
stk40 stk40,LOC107704982,LOC107755633,LOC107588492,LOC107705547 coding upstream 213911 25053698 ~ 25071225 (-)
oscp1b oscp1b,oscp1,LOC107588491,LOC107705542,LOC107704985,LOC107755648,LOC107700711 coding upstream 233092 25072879 ~ 25080305 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding downstream 722 24835099 ~ 24835364 (-)
G116179 rab42 non-coding downstream 2128 24833536 ~ 24833958 (-)
G116174 NA non-coding downstream 12676 24821501 ~ 24823410 (-)
G115954 NA non-coding downstream 647492 24187937 ~ 24188594 (-)
G115939 NA non-coding downstream 758219 24077631 ~ 24077867 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 239480 25079267 ~ 25082596 (-)
G116242 NA non-coding upstream 337665 25177452 ~ 25178607 (-)
G116237 NA non-coding upstream 371606 25211393 ~ 25558018 (-)
G116264 NA non-coding upstream 854322 25694109 ~ 25695357 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding upstream 864913 25704700 ~ 25706796 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 362721 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 466520 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 496298 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1160741 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 1226245 23582993 ~ 23609841 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 824932 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1539885 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1581931 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1967333 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1970530 26810317 ~ 26812974 (-)

Expression


Co-expression Network