cers2b (cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627)


Basic Information

Item Value
gene id cers2b
gene name cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5853476 ~ 5873058 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261014.1
tatctctctctctctctctctctctctctctttctctctgatcCTGCGTGTTTTACCGACGCCTGTCCCGCTGCCGCGCGCTCATCACCGGAGCCGAGCGGAAGAAAGACTCGAGTCGTCCGTGATCTCCTCAATCAGGAAATAGCGTTCAGACGCGCCACAGCCGTCGCTTCGTGGAGCCGCTCTCTCCGTTAAACCGATTTTTTACCAAgtagaaaactttttttgtgttcggGGAGGAGAGATGCGGTCGGTAAACAGCCTGGCCGAACCGTAAACCCGCGAACAGAGCGTTAAACCCAGCGGACAGAACCGGAGAAGCGAGAGACATCCCTCATCACGGTCCGCTGTTTCTGACCGACAGACGGCACACAGACTACtgaaGATGCTGGAGTGGGTGAGTGAAGTCTTCTGGCAGGAGCGTCTGTGGTTCCCCGAGGGTTTGGGATGGGCTGATCTGGAGGACCGTGATGGCCGGGTCTACGCCAAGGCGCGGGATCTGTGGGTGGCGCTGCCAATCGCCGTCCTGTTTCTCGCAATTCGACAGGTCTTCGAGAGATATGTGGCTACACCACTAGCCTCTCTGCTGGGCTTGAAGGAAACAACGAGACGACAAGTTACACGTAACCTCACACTGGAGTCCTACTATTGCAACACAACTAAAAACCCCAGTCAGAGCTCAGTGGAGAAGCTGTGCCTGCAGACGGGATGGACGGAGCGCCAGGTCCAGCGCTGGTTCAGACGCCGCAGGAATCAGGACAGACCCAACCTGCTCAAGAAGTTTCGTGAGGCCAGCTGGAGGTTTGCCTTTTACCTCCTCGCCTTCATCGGTGGTCTTGTTGCTCTAATAGATAAACCCTGGCTGTATGATCTGGAGGAGATGTGGAAGGGCTTCCCTACTCTGACGCTCCTGTCGTCTCAGTACTGGTACTACATGCTGGAGCTGGGCTTCTACACCTCTCTCCTCTTCAGCGTGGCGTCTGATGTCAAGCGTAAGGACTTCAAGGAGCAGATCATTCATCACGTGGCCACCATCATGCTCATCAGCTTCTCCTGGTGTGTTAATTACATCCGAGCGGGAACGCTCATCATGTTCATGCATGACTCGGCCGACTACCTGCTGGAGtcagcTAAGATGTTTAACTACGCCAGGTGGAAGAACGCATGCAACTACATCTTCATCCTGTTTGCTGCGATCTTCATCGTCACGCGCCTCATCATCTTCCCTTTCCGgATCATGTATTGTACATGGGTGTATCCCGTGACCCTGTACCCTCCGTTCTTCGGATACTACTTCTTTAACGGGCTGCTGATGGTCTTGCTGTGTCTGCACATCTTCTGGGCCGCGCTGATCATTCGCCTGGCCTTCCGCTTCCTGAGCAGTAACTCGTCGGTAGAAGACGAGAGGTCCGATCGAGAGGAGACGGACGAGTCAGAGGAAGAAGAACACATGAAAAACGGAGAGATAAAGAAGACCAGGCCAGCTCAGAACGGCCACGCTACGTACAACAACAACCACTCTAAGAAAACAGAGTGACGTCGAGAGAGGAGACACGTTCAGAGACCTAGAGATTCTTCCTCTGCTGAAGCAGAACAGAGACGGGAGAAGAACGGGATCAAGTGCTGTCTACACTAcagaccaacacacacacacacacacacacacacacacgcagggaGCAGTGCTGCCTTCATTAACACACGCTTACAGGAGCAGATCACCTAAAAATCAGCCTCATTTCCTGGCGCTGTTCCAAACGTCTAGTTATTTATAGCAGAATGTCCAAAGCAGCTCTTCCCGTACGATATAAATCAATACCGAGCACGGCGGTCACGCTTCCAGTCTCATATGGACTGCTTTCATGCTTCGTTGTGCTTCCTAGCGCCGGAAACCCTGCTTTCACTGAATGGAGACAGCCGTGGAACAcaagaaaaacacaattcagAGAAAATGTCCGAACTGTGAGACATAAACACCAAGATAGGTCTTTTAAACGTGCGTGGGTTTCTCTCTCGATTCCCGATATTCTGGTTGCCTTTTTTGTTTCTACATTCTGCGGCAAAGCAGTGGAAAGCAGATCAGATATGAAGCCAAACCTGCTCCTAAAAAGGCCTtacgagtaaatgatgacagatttagGTGATCTGTGCCTTCTAACAGTGCCTTCCTTAGCCATTCTTTGCTCTTTTTCATGCCTTGTTTTtcgtttttaattgaaaaaactGCTCTCTTTCCAGAGTATACCCATCCATCCTATAATGAATGCAGAACACATCTGATACCAAGTGGACCGGTTTGGTCTCAGTGCGGGTCACAGCCATGTCTCACAGAATCACTTTCAGGTTTCTGAACGCATCGGCTGCAAGCGAAGTCTTTCGCTTATTCATATGACTGGATTTAACCCACACATTGGGTTTCGCTCACGGCATCGGTCACCAAACACTGGTTGTGTGTGATGAGTATGAACCCCAGAAGTAACTGAGCGCACCTTTAAACGAGGCCAGACACGACTAGCTTCTTAACAAACCACCCATTCACTGCCAGTCTTTTGATGTTAAAGCCGAACAAACACGCACGGGCCAGTTGCAGCTCGTCCGCTGATTCTGAACACTCTCGAGCTGCCTGCCAAAGATTGAATGAATGTCGATGTGCTGCTGAAGACGTCTCGATCTTCTCTGTGGCCAGTTTCCTGTTCAGACGCTCGGACTCAGCTGCTTGGTCTGAATCATTCCTCCCGTCGCTCTCCTCTGGACTTCGTTTCAGACGCAGTCGAGTCGATTACAGTGTtacctttattttgtattttcctgTGTTTTGTAATATGATGATATTATGGAggatgttaacaataaaatactgaatGTAAGCCA

Function

symbol description
cers2b Predicted to enable sphingosine N-acyltransferase activity. Acts upstream of or within cellular response to ceramide. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including lens placode; mesoderm; otic vesicle; pleuroperitoneal region; and solid lens vesicle. Orthologous to human CERS2 (ceramide synthase 2).

NR:

description
PREDICTED: ceramide synthase 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261014.1 True 2871 mRNA 0.50 11 5853476 5873058

Neighbor

gene id symbol gene type direction distance location
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding downstream 3262 5834157 ~ 5850214 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding downstream 30626 5820991 ~ 5822850 (-)
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding downstream 279676 5571501 ~ 5573800 (-)
ttk ttk,LOC107713924,LOC107726228 coding downstream 282694 5560481 ~ 5570782 (-)
bckdhb bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448 coding downstream 293580 5508617 ~ 5559896 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding upstream 3990 5877048 ~ 5900217 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding upstream 375861 6248919 ~ 6261997 (-)
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding upstream 390446 6263504 ~ 6279577 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding upstream 688792 6561850 ~ 6566189 (-)
LOC122360792 NA coding upstream 777891 6650949 ~ 6690226 (-)
G110106 NA non-coding downstream 714 5852432 ~ 5852762 (-)
G110102 NA non-coding downstream 36603 5815560 ~ 5816873 (-)
G110100 LOC107713901,LOC107689161,LOC107559047,LOC107689017 non-coding downstream 39792 5809971 ~ 5813684 (-)
G110093 NA non-coding downstream 45127 5778754 ~ 5808349 (-)
G110090 NA non-coding downstream 76435 5774847 ~ 5777041 (-)
G110206 NA non-coding upstream 124563 5997621 ~ 5999361 (-)
G110221 NA non-coding upstream 245727 6118785 ~ 6119767 (-)
G110224 NA non-coding upstream 264049 6137107 ~ 6207805 (-)
G110227 NA non-coding upstream 266336 6139394 ~ 6208668 (-)
G110216 NA non-coding upstream 267481 6140539 ~ 6141321 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other downstream 34858 5817040 ~ 5818618 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other downstream 62942 5782667 ~ 5790534 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 607918 5232211 ~ 5245558 (-)
G109724 LOC107084717,LOC106511825 other downstream 1757972 4094757 ~ 4095504 (-)
G109600 NA other downstream 2723497 3113842 ~ 3129979 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 29519 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 156150 6029208 ~ 6034777 (-)
G110215 NA other upstream 223617 6096675 ~ 6099927 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other upstream 406651 6279709 ~ 6339496 (-)
G110303 NA other upstream 1208904 7081962 ~ 7083524 (-)

Expression


Co-expression Network