ddx61 (ddx61,LOC107699492,LOC107714973,LOC107657698,LOC107593657,LOC107595651,LOC107723428,LOC108428944,LOC103044136)


Basic Information

Item Value
gene id ddx61
gene name ddx61,LOC107699492,LOC107714973,LOC107657698,LOC107593657,LOC107595651,LOC107723428,LOC108428944,LOC103044136
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16273280 ~ 16280228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261015.1
CGTGCGTATATGTCCTCCGAGCTCGATTCAGCGCACGGCCATGTTAAATCTCTAGACTGAAGAGACAAAAGCCACAGCAACAAAGAATTTCTCAAGAAACGTTCGAAGAATTAATCAAATCCTCGAAGATTCAAATCCTTCAAAATTCGGAGGTGTTCCAGAAATTCCTCCTCTAATTGTTCAGGAACTGTGACCAAGTGAGGAAAAAACAAGACGTCGCCAAGCCAAGAGTGGAAACGCTTACGGACTCAACGTTATTTTGGACTCGTAATCCTGCATTGACTTTCTTTACGTTTGGAATCCCTCAGTTTGGAGTTTTTCAGCAGGTTAAAGAAGAGCAAGTGACACTGAGCGAAGTTTCAAATTCCTCATGACTAAGAGAATACGGGAATTTTAAGAGCACATTAAGAATCTTTAGCTGAGCCTTGTGCTTTTGAAtgtaaatactttatattttttttgatacCAAAAGGAAAACAGAGGGTACTACAGGATTTCTGCAAtccagctgtaaaaaaaaaaaaataattaaaaaaaagtaaatactttGTACATTTTCAGGGATAACGTCAAAAGTGACTTTTGAAAAGCATTAATAGATTTTTTGCTAAcgtgcatttttgaaaatcctTGTGCGAGACTTGAATTTTACAAGTAAGTTTGCTAGTTATTTTGTACGTTGGCTCTAGGcttgatatatttattcatataaatataattttctccttttttggGAGAGCTTATTATAAACAATTGTTATACGCCAGGCACTCTTCTTTTTAAGAGGTCTGTACGTACCGGAAACTGTTTACACACAAGCGCGGTGAGCGTAACAGtaaaacagttttacaaatagctcaaaagtagcaaaaaaaagtaaaaagattaatttgttAGAAACTGTTGAGGGGAAAACCTGATAATGGCTACAGCGAGAACAGAGATCCCTGCTTCAGTCATGTCAATGAGCAAACAGAATGGACAGTCCAAGCCCATGAGCCTCCAGTCAGGATCGCTTACTTCCTCATCACAATCAGGAAAAACATCTGTGATGCCCCAGAAAGGAAACAGTATACCCCAAAGCAGTGGTGGTATCAGgTTTGGTGATGACTGGAAGAAGTGCCTGCAGCTTCCACCGAAAGACATGAGAGTGAAAACCACAGATGTGACTGCAACCAAAGGAAATGAGTTTGAAGATTACTGCCTTAAGAGGGAACTGCTGATGGGTATTTTCGAAATGGGCTGGGAGAAGCCTTCCCCTATCCAGGAGGAGAGTATTCCTATTGTCTTGTCAGGGAGGGACATTCTTGGCCGAGCTAAAAATGGCACAGGTAAAAGCGGAGCCTACCTCATCCCCCTCTTGGAAAGGATTGACCTGAAGAAGGACTATGTTCAAGccttAGTGTTGGTACCAACACGTGAGTTGGCTCTGCAGGTGAGCCAGATAAGTATCAACATGAGCAAGCACCTTGGTGGCGTCAAGGTCATGGCTACGACAGGTGGCACTAACCTGAGGGATGACATCATGCGCCTTGATGAGACGGTACATGTTATAATAGCTACCCCAGGAAGGATCCTTGATTTGATAAAGAAAGGTGTGGCCAAGGTGGACAAAGCTCAGATGATTGTGATGGATGaggctgATAAGTTGCTTTCTCAAGACTTTGTGGTGCTCATTGAGGACATCATCAGCTTCCTGCCCAAAAACCGCCAGATTCTGCTTTATTCTGCCACTTTCCCCATCAGTGTGCAGAAGTTTATGAGCAAGCACCTTCAGAAGCCATATGAAATCAATCTGATGGATGAGCTGACACTGAAAGGCATCACTCAGTACTATGCTTATgtgacagaaagacagaaagtgCACTGTCTCAACACGCTGTTCTCCCGGctccaaatcaaccaatcaatcatcTTCTGTAACTCCACCCAAAGGGTGGAACTCCTTGCCAAGAAGATCACACAACTTGGCTATTCCTGCTTTTACATCCATGCAAAGATGATGCAGGAATACAGAAATCGTGTGTTCCATGATTTCAGAAACGGACTCTGTAGAAACTTGGTCTGCACAGATCTTTTCACAAGAGGAATTGACATCCAGGCTGTCAATGTAGTCATCAACTTTGACTTCCCCAAAAATGCAGAGACGTATCTGCACCGCATCGGTCGATCAGGTAGATATGGTCATCTGGGTCTTGCCATTAACCTGATCACCTCAGAAGATCGTTTTAACCTAAAGGGCATTGAAGACCAGCTGATGACTGACATAAAGCCCATACCCAGCAGCATTGACAAGAGCCTGTATGTGGCTGAGTTTCACTCCATGAACCCTGATGAAGAGGAGGCAGCTCACAAAGCAGGCGAGCTTAATTAACCCTTACTGGAGAATAAAGGGACCAGTGCTTGGCATTCTGCACAATTTCTACTGAAGACAGACGCAAAGATGACTcggtttttcttttgttttattgtagtttCTTTTCTCACCAAATGCTTCAGGGGTCTGGAACTACCATGGTAAAATGTGATCAGCTGCCACAGGTTTAGAGGCCAGTATAAAGTCATTAGGTTTTGCTGTTTTCTGGACTTGCTGAGGCAGCTTACCCCTTTTCCATTTGGAGCACAATAAGCCACTGTTCTCTGGACCCAGAGCACTGGCAATGACCATTCACCGTCCATAACTGCTGTTCATGaggattttttcccccctttttatTTGCCATAACAATGAAATGGAAAATACTGCCAGAAGAGGGTGTCAAAACCAAATTCCCAAGCTTTGAGTAAATTTAGTACTGTTTTATCCAGCACCTGATGCACAAGGTTTTTGAGCATTGTTATAATGAATGATTTTACTCAGCTTTACAGTTGATTAGGGAAGGAAGTTTAACACATTCATAATGGTTTTCTGTTGGTTGTTCAAagctttgtgtatgtgtatatctTCTGGAAAGTGGATTGTGCTTTCGTTCTAATACAAAcagacattttgacattttctttgcCTAACTTGACTCCTCTTTCCCAAaagtttgaaaagtttttttgtttaactccGTCTCTGCATTGTCATGCTCACTTCGGCCATTGTTTCTCTAAGTGCCTTACTCTGTTATATACTTCCTCTGGGTAGGACGGAGCACTCTGTGCAtggtgcaaaaaacaaaaacaaaactccGCTTTGGTCAGGATTGTCAGTGGACGTTTTTACCTGCTAGATTGACTTCTCTAATACCTCAACCCCATAAGTCACTTGTTCTCTATTTAACCCCCCAGTTTGTTGGTAGTGAACAGTACCTACCTCAGCATTGGCTGGGTGAGCAATGGATTTGCTTGCCCAAAAAACAGGTACCACAGCTCAGATGGTGGGTGAGGCTGGACTTCAATTTCAGTAGTTCATCctgcatttttgaaaactgGAAAACAGTTTAGGTTTTTCAATATATACTTCTCTTTTTACCCCCTGTTGATACATGCAGTgaggttttattaaaacaatgaaatgtgATTTGATCAGATTCAGTTTTCCATTAGTGGGGTCTAATGCACAGAAACaattgtttaggtttttttttttttttttttttttaaacaaatcagcaCAAATGCTGTGATGAAATGGCAGCTGTAATAAAGTTGGTAGCTCTCAAAGTATAAACTTGTGTCCCCCATTGTATGTGTTAAATTGTGCTCTTGGACATGTGTTGTATTAAGTAGAAAGCTGTATGTTTTACTGCAAGGATTTATGGGAGAATGGCCAAAGCTTTTTGCTCCAAATGTTAATGCCAGCCTATCCTGTCCCTTCTCttttaagcaaaataaagtCCAGCATATTCTcca

Function

symbol description
ddx61 Predicted to enable mRNA binding activity. Acts upstream of or within response to heat and stress granule assembly. Located in cytoplasmic ribonucleoprotein granule. Orthologous to human DDX6 (DEAD-box helicase 6).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase ddx6

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261015.1 True 3840 mRNA 0.41 14 16273280 16280228

Neighbor

gene id symbol gene type direction distance location
tomm40 LOC107723430,LOC107593658,LOC107657699,LOC107699493,LOC108438269,LOC107714943 coding downstream 810 16267038 ~ 16272470 (-)
derl1 derl1,LOC107593655,LOC107657695,LOC107714924,LOC107736822,LOC107699495,LOC107595682 coding downstream 8738 16256482 ~ 16264542 (-)
zgc:110410 zgc:110410,LOC107723576,LOC107657623,LOC107593651 coding downstream 29808 16239954 ~ 16243472 (-)
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding downstream 62647 16197719 ~ 16210633 (-)
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding downstream 118892 16152504 ~ 16154388 (-)
bcl3 LOC107715119,LOC107596570,LOC107723427,LOC107593656 coding upstream 659 16280887 ~ 16301782 (-)
irge4 LOC107657702,LOC107723472,LOC107593663 coding upstream 38931 16319159 ~ 16323788 (-)
LOC122360309 LOC107699461,LOC107715144,LOC107596268 coding upstream 43947 16324175 ~ 16327955 (-)
LOC122360110 LOC107723470,LOC107699447,LOC107657603,LOC107593661,LOC107581109 coding upstream 52199 16332427 ~ 16336832 (-)
LOC122361092 LOC107723470,LOC107657603,LOC107699447,LOC107593661,LOC107581109 coding upstream 62282 16342510 ~ 16344956 (-)
G113281 NA non-coding downstream 76603 16120326 ~ 16196677 (-)
G113280 jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576 non-coding downstream 77384 16194029 ~ 16195896 (-)
G113300 NA non-coding downstream 80591 16190862 ~ 16192689 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding downstream 205735 16066166 ~ 16067545 (-)
LOC122360541 NA non-coding downstream 287096 15984741 ~ 15986184 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding upstream 72042 16352270 ~ 16357623 (-)
LOC122360769 NA non-coding upstream 207890 16488118 ~ 16494739 (-)
G113405 NA non-coding upstream 272380 16552608 ~ 16553858 (-)
G113433 NA non-coding upstream 308457 16588685 ~ 16589614 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding upstream 326486 16606714 ~ 16607680 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 33774 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 44814 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 132045 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 259529 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 266809 16001313 ~ 16006471 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other upstream 305856 16586084 ~ 16682178 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1532142 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1915243 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 2077189 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 2212398 18492626 ~ 18520287 (-)

Expression


Co-expression Network