G10319


Basic Information

Item Value
gene id G10319
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16220270 ~ 16220876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU11362
CCTCTCTCGCTCCATGGCAGGTCTTGGCACCGAGTGTGGGGTCTGTTTACATCATCACTGGTGGGTATCTGGACGTACCTCAATGTACAGTTCTGAAGCCATTTTGGGTCTTTATCGTAAGGTGACTGTGGAGAACTTTTAATTGGGAAACTGCTAAAGAAATACGATCACCTTGTATCTCAACATGATACGCATTAAACTAGTCTGAGTGTGAATGGAGATCTCTGTTTACATAACAGTCAAACAAAGACTACATGCTTCAGGCTGTTAGCAGTAGCGCTAGCAATAATAATAGATAATTGCCTTTGGTATCTGTTTAAAACGGTTTTGTGTTTTGCTTTCGTGAGTTAATCAGGCACTAATTTTCTGTTTCGATATATTGTCCACAGTCTGCAAAAGCTTTGAAGTTACTTCATCTACCACAAAGCAGAGAGTCGGTACAGAGCAATATGAAACCTATGAGGTGTGTATTTACTTTGAACAGGACTGTTTTAACTTTTGTGTAAAACTTAGAGCTCTACCTCACCCAAAGCTTAAAACAAACAGAAAGAGACACACAGAGAGAAAGAAAGGGTAAAAATGCCTGCAATCTGTGTGCCCGGCTGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU11362 True 607 lncRNA 0.35 1 16220270 16220876

Neighbor

gene id symbol gene type direction distance location
CI01000000_16142079_16144991 NA coding upstream 74991 16142079 ~ 16145279 (+)
CI01000000_16106717_16114328 EMX1.2, EMX3, EMX1 coding upstream 105915 16106598 ~ 16114355 (+)
CI01000000_16096527_16100582 B4GALT7 coding upstream 119041 16096527 ~ 16101229 (+)
CI01000000_16087757_16091758 TMED9 coding upstream 128235 16087433 ~ 16092035 (+)
CI01000000_16066787_16081915 LMAN2 coding upstream 137787 16066309 ~ 16082483 (+)
CI01000000_16226281_16275284 FAT2 coding downstream 5405 16226281 ~ 16275477 (+)
CI01000000_16282545_16293288 MTNR1AL coding downstream 61250 16282126 ~ 16294665 (+)
CI01000000_16339900_16340277 ATOX1 coding downstream 119024 16339900 ~ 16340381 (+)
CI01000000_16362843_16368520 SPARC coding downstream 141815 16362691 ~ 16368520 (+)
CI01000000_16375958_16382103 G3BP1 coding downstream 153082 16373958 ~ 16382558 (+)
G10316 NA non-coding upstream 892 16219166 ~ 16219378 (+)
G10308 NA non-coding upstream 12709 16207259 ~ 16207561 (+)
G10305 NA non-coding upstream 16839 16203087 ~ 16203431 (+)
G10294 NA non-coding upstream 33762 16186270 ~ 16186508 (+)
G10293 NA non-coding upstream 34098 16185895 ~ 16186172 (+)
G10325 NA non-coding downstream 69767 16290643 ~ 16290871 (+)
G10327 NA non-coding downstream 70604 16291480 ~ 16291708 (+)
G10328 NA non-coding downstream 71151 16292027 ~ 16292245 (+)
G10330 NA non-coding downstream 76052 16296928 ~ 16343449 (+)
G10201 NA other upstream 289708 15930266 ~ 15930562 (+)
G9201 NA other upstream 1985329 14215024 ~ 14234941 (+)
G7522 NA other upstream 4041262 12178369 ~ 12179008 (+)
G7514 NA other upstream 4083262 12136522 ~ 12137008 (+)
G7153 NA other upstream 4974637 11244457 ~ 11245633 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 1118278 17339154 ~ 17346200 (+)
G11465 NA other downstream 1663077 17883953 ~ 17887462 (+)
G11521 NA other downstream 1811863 18032739 ~ 18164112 (+)
G11801 NA other downstream 2459991 18674116 ~ 18745376 (+)

Expression


Co-expression Network