grwd1 (grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021)


Basic Information

Item Value
gene id grwd1
gene name grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13152349 ~ 13157873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261054.1
CTGAAGCGGAAGTCCTCCACTCTCTCAAAATGTCCGCGGCCGATGAAGACACGTTGCCTCAGGAGGACGATGAGTTTGAGGACATGGAGGAGAGTGAAAACGACGAGGATGATATGGATGGAGAAGGACAGAACGGGGATGGAGAGGGGAAAGTCTATGTCCCCGGTCTGCAGCCGCTTAAGCCGGGAGAAGAGCTGGAGATGGACCGCTCCGCTTACCGGATTTATCACGAGTGCCAGACCGGTGCCCCATGCCTGAGTTTCGATGTGGTGCGTGATGGTGAAGGAGAAGGGCGAGAGCAGTTTCCTCTCTCTATGATTCTGTGTGCTGGTACTCAGTCTGAAACCGCCTTACGCAACAGGCTTATTGTCATGCACATGCACAATCTTCATGAAACTGAAAAGGATaaagatgaaaatgaaagcAGTGATGAAGAAAGTGATGAAgacgaggaggatgaggagaaGAAACCACAGTTGGAGCTAGCCATGGTGCCACATTATGGTGGGATCAACAGAGTCCGAGTCACCCAGCAAGGGCAAAAGACATTTGCTGCGGTCTGGTCAGAGAAAGGACAGGTGGAGATTTTTGACCTCCAACCTCAGCTTGAGGCTGTGCAGAGTTCAGCAGCGATGTCAGCCTTCATCAAGCAGCAGAAGGAAGCCACGCctcttttcactttttctgGTCACATGTCAGAAGGGTTTGCCATTGATTGGTCATCCAAGGTACCAGGACGCCTGGTAAGTGGTGACTGCAAGAAGAACATTCACGTCTGGGAGCCACAGGAGGGCGGGACTTGGAAGGTTGACCAACGGCCTTTCAGCTCACACAGCAAGTCTGTTGAGGACCTGCAGTGGTCACCTACTGAAGCCACTGTTTTTGCATCTTGCTCAGTGGATCAGTCCATTCGCATCTGGGACATAAGGGCACCACCTAATTCCATGCTCTCAGCCGACGAGGCTCATTCTTCAGATATCAATGTTATCAGCTGGAACATGACCgaaccttttattttgtctgGAGGAGATGATGGCCTACTGAAAGTCTGGGATTTAAGACAGTTCCAGtctGGACGTCCAGTGGCCAGTTTTAAGCAGCACAGTGCTCCCGTGACGTCAGTGGAGTGGAACCCTGTTGACTCAAGTGTGTTTGCCGCCTCTGGAGCTGATGACGTGGTCAGCCAATGGGATCTGTCAGTGGAATCATGTGACATGGGAGAACAGGCAGAGGGCTTAAAACAACTACCACCACAGCTACTGTTCCTTCACCAGGGCCAGAAAGAAGTGAAGGAGCTCCACTGGCACCCACAGATTCCTGGAGTTCTCATTTCCACCGCGCTGTCGGGATTCAACATCTTCAGAACTATTTCtgtttaactgtgtgtgtgagtgagaagagagacagagaaagagagtgtggaCAGTTTCAGGCAGAAAgaatgtgcatgtgtataattttaaacgtacatagatggatgaatggaacATCTAGGTATGTGTGACTCAtgcatttctgtcatttttctaCCCCTTCTGGAACCATTTTCCTCAACTTCATGAAGCAAGCAGTGTTGTAATTGTGTGATAAATTACTCATTTTTACAAGTCTGttgtttattaactttatttaaaagttatagCACCATCATGTTTACTGCATATTTCTTGTagccattcatttaaaaaaaggcttcTTTTCTCTTAATGGacaaaacagagaaagataTTTTAGTCTTTCATTCTGAAACTCTTAAAGGCAGACTGTTGGTTTTAAGGCAGACTCCTGGTGTTTtgggttaaaaatatattatacttcCCACGttataataaacaatgttttgttagttccta

Function

symbol description
grwd1 Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human GRWD1 (glutamate rich WD repeat containing 1).

NR:

description
PREDICTED: glutamate-rich WD repeat-containing protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K14848 RRB1, GRWD1; ribosome assembly protein RRB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261054.1 True 1853 mRNA 0.47 7 13152349 13157873

Neighbor

gene id symbol gene type direction distance location
atg12 atg12,LOC107692547,LOC107673043 coding downstream 5935 13144049 ~ 13146414 (-)
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding downstream 8438 13136647 ~ 13143911 (-)
LOC122359945 NA coding downstream 26147 13124348 ~ 13126202 (-)
LOC122359944 NA coding downstream 28462 13120866 ~ 13123887 (-)
fdps fdps,LOC107673012,LOC107692580 coding downstream 32476 13116477 ~ 13119873 (-)
zgc:174888 LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913 coding upstream 929 13158802 ~ 13162784 (-)
flcn flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420 coding upstream 5057 13162930 ~ 13170984 (-)
josd2 josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995 coding upstream 43509 13201382 ~ 13204597 (-)
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding upstream 148155 13306028 ~ 13319763 (-)
cacng6b cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398 coding upstream 315602 13473475 ~ 13485710 (-)
G112229 NA non-coding downstream 126220 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 499943 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 540355 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 662229 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 664656 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 30046 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 56057 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 59330 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 131332 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 273271 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 773900 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1285034 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1740572 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1765356 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1865917 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 496187 13654060 ~ 13683909 (-)
G112478 NA other upstream 1076681 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1340390 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1424606 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1741309 14899182 ~ 14904907 (-)

Expression


Co-expression Network