tpi1b (tpi1,tpi1b,LOC107672981,LOC107724698,LOC107700200,LOC107744284)


Basic Information

Item Value
gene id tpi1b
gene name tpi1,tpi1b,LOC107672981,LOC107724698,LOC107700200,LOC107744284
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13694759 ~ 13701743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261062.1
GCCCACATCTCCTCGCTGTCTCTTTGAACGGAGGTTGTCCGCGTTCTTCATACACCAAATACCTTCGGCTGAAAGCAACGTTTTTGCAAGTATGACCGGCAGGAAGTTTTTCGTGGGTGGCAACTGGAAACTGAACGGCGACAAAAAGAGCATCGAAGAGCTCGCCAATACATTGAATAACGCCAAGCTCAACCCAGACGCCGaGGTGGTGTGTGGTGCTCCATCCATCTACCTCGACTACGCCAGGTCCAAGCTGAACCCTAACATTGATGTGGCGGCACAGAACTGCTACAAGGTTGCAAAGGGAGCCTTTACCGGAGAGATCAGCCCTGCGATGATTAAGGACTGTGGAGTAAAATGGGTTATTCTGGGACACTCCGAGAGACGCCATGTGTTTGGAGAGAGTGATGAGTTGATTGGGCAGAAGGTGGCTCATGCTCTTGAGAGCGGTTTGGGTGTGATCGCCTGCATCGGTGAGAAGCTGGATGAGAGAGAGGCCGGGATTACTGAGAAGGTTGTTTTTGCACAGACCAAGTTCATCGCAGATAACGTGAAGGATTGGAGCAAAGTGGTCCTTGCTTACGAGCCTGTGTGGGCCATTGGCACCGGCAAAACTGCATCACCCCAGCAGGCTCAGGAGGTGCATGACAAGCTCAGGCAGTGGGTGAAAGCCAATGTCTCAGAGGCTGTGGCCAACTCCCTCAGGATCATTTATGGAGGATCCGTCACTGGAGGGACCTGCAAGGAACTAGCTTCTCAGAAAGATGTGGACGGCTTCTTGGTGGGCGGCGCTTCCTTGAAACCAGAGTTTATCGACATTATTAACgcaaaagcataaataaagcAATCATCTACCTAAACCCTAAGGTTTAGGTCTGCTCCCAAATCCCGCTCTTTAGAAAGTGTTATTGTGCTTTTGttgctgtattttctttttttttttttttttttattgttgttgttgttgttattattattattattattattattattattattattattataattattattattataaagggACAGATTGAGACGTACTGAACACAGAAATACGTGTGTTATTAGCCCTCCTACTAGTGTAGTTAACTACAGGACTGTAGTGAGAACCATCATGGGGCTTCGAGTCCATGCCTTTACTTGAATAATGTTTACCAACATTCTCATGTATGCAGTGTCAAAAATCTAGGGAGAAGTAAATCGACTTCAGTGTGTTATTAATTCAAGCGAAACTACTTTCCATGAATGTGGTTGTCCTGATGTTTTCCTGTTTCTCTGAGTGGCCTATCCTAAAGGTGCTCACATGTAATAACCAACGTCATTTGGTATAAAAGATACCTAGAAGataaatattctaataaatgtttcagaagTGTAGACCTAA

Function

symbol description
tpi1b Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including brain; cardiovascular system; mesoderm; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).
tpi1 Enables protein homodimerization activity; triose-phosphate isomerase activity; and ubiquitin protein ligase binding activity. Involved in glyceraldehyde-3-phosphate biosynthetic process. Located in extracellular exosome and nucleus. Implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency.

NR:

description
PREDICTED: triosephosphate isomerase

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0006098 pentose-phosphate shunt biological_process
GO:0004807 triose-phosphate isomerase activity molecular_function

KEGG:

id description
K01803 TPI, tpiA; triosephosphate isomerase (TIM)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261062.1 True 1390 mRNA 0.44 7 13694759 13701743

Neighbor

gene id symbol gene type direction distance location
si:dkey-26c10.5 LOC107549484,LOC107724725,LOC107700203,LOC107672979 coding downstream 16501 13673756 ~ 13678258 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383 coding downstream 90018 13592032 ~ 13604741 (-)
il11a NA coding downstream 121164 13565402 ~ 13573595 (-)
znf628 LOC107724809,LOC107549478,LOC107744293,LOC107598382,LOC107672962,LOC107692578 coding downstream 130532 13556250 ~ 13564227 (-)
nat14 nat14,LOC107724968,LOC107549449,LOC107744294,LOC107692586,LOC107672977,LOC107598397 coding downstream 138796 13552540 ~ 13555963 (-)
gnb3a gnb3a,LOC107549492,LOC107672997,LOC108432288,LOC103042898,LOC102782474 coding upstream 51671 13753414 ~ 13760343 (-)
p3h3 p3h3,LOC107700158,LOC107724912 coding upstream 62261 13764004 ~ 13770786 (-)
cxcr3.3 NA coding upstream 133777 13835520 ~ 13838704 (-)
cxcr3.2 LOC107700152,LOC107551671,LOC107717417,LOC107598452,LOC107671173,LOC107755594 coding upstream 139565 13841308 ~ 13844368 (-)
ceacam1 NA coding upstream 164637 13866380 ~ 13875529 (-)
G112363 leng8,LOC107724921,LOC107700201,LOC107744285,LOC107672965,LOC107549486,LOC107598384 non-coding downstream 796 13688506 ~ 13693963 (-)
G112390 NA non-coding downstream 35289 13659005 ~ 13659470 (-)
G112377 NA non-coding downstream 75423 13618687 ~ 13619336 (-)
G112361 NA non-coding downstream 85425 13606631 ~ 13609334 (-)
G112350 NA non-coding downstream 151448 13534721 ~ 13543311 (-)
LOC122360145 NA non-coding upstream 12117 13713860 ~ 13789086 (-)
G112410 clstn3,LOC107744281,LOC107724674,LOC107700197,LOC102784285 non-coding upstream 31445 13733188 ~ 13734148 (-)
G112369 NA non-coding upstream 75526 13777269 ~ 13778805 (-)
G112426 NA non-coding upstream 83272 13785015 ~ 13786453 (-)
G112447 NA non-coding upstream 199121 13900864 ~ 13901076 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 10850 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1316310 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1827444 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2282982 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2307766 11333175 ~ 11386993 (-)
G112478 NA other upstream 532811 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 796520 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 880736 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1197439 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 1206877 14908620 ~ 14913646 (-)

Expression


Co-expression Network