trim71 (trim71,LOC107751884,LOC107601676,LOC107704101,LOC107657583,LOC107723073,LOC107551222)


Basic Information

Item Value
gene id trim71
gene name trim71,LOC107751884,LOC107601676,LOC107704101,LOC107657583,LOC107723073,LOC107551222
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 9678223 ~ 9702267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261087.1
CTCGGGCGGAAGTGCGCTCTAGGCTTTTTTAGTATGGACGCGTTCGCTTGATGGTCACGCGATGTAGAATTGTAGTGCGCGCGAGCGTCATTGCCAGTAAAAATGAATGCGGATTGAAGAGGCGCGCGGAGAGAGCGTTTGTTTTGAGCTGTAAACGCGAGACGAATATGGGCAGCTGAAACCTCGGGAACGACTGGAAACGAACGGTCGAATGGTTACTTTATACCCCTCGCCAAAGTGTTACTGTAACCGGACTGAGGGAAGTTAAAGGGGCTTTTCAGCCTCGCCACAGTAACAGGATCTCGGGGGGCGCTGAGCTGCGTGCTAACGAGCTACATGGGACAtactttgaattatttaattgcGGCTCGCGCAAGCGCGTATTGAGAATAATGACGCGCAGATGGTAGACTAAAGCGCGTTCATGGAAAACGGACGTATTTGCGCTCGGGAAGGAAAAAACTGACACCGTATCGAGTGCGTTTGGCCCCTCTCGTCATGCGGCGGTGGGGGAGGATCGGAGCAGGGACCTCGCAGCGGATTTCATGTTTCGCAACAATGTTAATGCCCCATAGCGAGGGATTATAAGGCCTCAAAATGACAATTGGTTTCCAAACGTGCGCTCGAGAAGTTGCGTAAAGAGTTTGTTCGGCGAATTTCTATCAGTAAACACCAAAGCAGACAGCCCCATTCAATCTAAACTCGTAAAACGGGAATGTATATATCAAGTATCGTTGAATGCAGCATGCCAAGTCTATGATCTGCATCGTTTGCTCGAATTGATCAGGGAAACCGTTTCGGAAGCTTTTTGTGTATCTCAACGCGTCTTTATGTGTGAAGTTATTTTGTGGTCCTCTGCGCAAATGGCGTCTTTCCCAGACTCCGACCTGCAAACATGTCCGCTGTGCAAGGAGCTGTGCGGCTGCTCTGCTCCGATCTCCTCCAATTCATCTacctcctcctcgtcctcccaGACCTCCAACTCCTCATCTACCTCATCCACCAGGAGGCTGCACGTCTTGCCCTGTTTGCACGCCTTTTGCAGGCAATGCCTGGAGGGCCACAGGAGCCCGGGTGACCCTCTGAAGCTCAGATGCCCCACATGCGACCAAAAAGTATCTCTTTCGGAGTCAGGCGTGGACGCGCTGCCTTCCTCCAACTTTCTCTTCAGCAACCTGCTGGATGTGGTGGTGTCTGCTGAGGAGCAGGGCAAGAACGGTCGGTCTTCATCGGTGGTCCATCACGGTGGTCTGCTGAGACCGCAGCACCTCTCAGACCCTCAGTGCAGCTCTTGCGATGAGGGAAACCCCGCTACCTCCCACTGCCTGGACTGCCAGGAGTACCTGTGCGATAACTGCGTCAGGGCCCACCAGAGGGTCCGACTCACCAAAGACCACTTCATCGAGGGGCTGATGGAGAGTTTACACCTGGCCAACCGCACCAACAACTCCAACACCCCCATCAACATCTCGCAGTCCTTCCACAACAGCTTCTCCATGCTGAATGTTTTCCAGGAGAGGATGGACTTCTGCCAGCAGCACGATAACGCGGTGCTGCGTTTTTTCTGTGACAGCTGTGGCGTGCCGATTTGTAGAGAATGCAGCCTGGGCAGACACGCGGGTCATAGTTTTACCTATCTGCAGGAAGCACTGCAGGACTCCAGAGCGCTGACCATCCAGCTGCTTGCAGACGCTCAGCAGGGCAGACAGGCTGTGCAGctgaGCATCGAAAAGGCCCAGGCCATTGCTGAACAGGTAGAGCTGAAGGCTAAGGTTGTTCAATCAGAAGTAAAAACCATCACTCTTCGCCATAAGAAAGCTCTGGAGGAACGTGAGTGTGAGCTACTCTGGAAGGTGGAGAAGATTCGCCAGGTGAAGGCAAAATCACTTTACCTGCAGGTTGAGAAACTACACCAGAATCTCACCAAGCTGGATAGTACTATCGCCACAGTGACACAGGTTCTAGAAGAAGGCCGTAGCATAGATGTACTGCTAGCACGAGAGCACATGCTAAATCAGCTACAGGAGCTTAAATCCCTCCGCTGCATCCTACAACCCCAAGAAGACGATCGAATCATGTTCACCCCTCCAGACCAGGCTCTTCTGATTGCCATCAAGTCCATGGGCCTCATCAGCAGCGGAGCCTTCGCCACAGCTTCCAAAGCTCATGGTGAAGGCCTCAAGAGAGCGCTGCAGGGAAAGCTAGCTTCTTTTACCGTCGTAGGGTATGATCATGACGGTGAGCCTCGATTGTCCGGTGGTGACAGCGTCTCAGTTGTGCTAATGAGTCCGGATGGTAATTTGTCCAGTGCAGATGTTTCTGACCACCAAGATGGAACGTACACAGTCAGCTATCTGCCCAAAGGCGAGGGCGAGCATTTGCTCTCGGTGCTTATATGCAATCAGCACATTGAGGGAAGTCCTTTCAAAGTGATGGTTAAATCCGGTCGCAGTTACGGCGGTGTAGGCTTGCCCATTGCGTCCTTCGGAGGAGAGGGAGATGGGGATGGGCAGCTGTGTCGGCCTTGGGGCATCTGCGTGGATAAGGAGGGCTATGTGGTGGTCGCTGACCGAAGCAACAATCGCGTGCAGATCTTCAAGCCTTGTGGAACGTTCCACCACAAGTTTGGCACTTTGGGCTCACGACCGGGCCAGTTTGACCGCCCTGCTGGTGTCGCCTGTGACAGCCAGAGAAGAATCATTGTGGCAGATAAGGACAATCACCGCATTCAGATCTTCACATTTGATGGTCAGTTTCTTCTCAAGTTTGGTGAGAAGGGAACCAAAAATGGACAGTTCAACTACCCATGGGATGTGGCCGTCAACTCTGAAGGCAAGATCCTGGTTTCGGATACACGCAACCACCGCGTGCAACTCTTTGGACCTGATGGGACTTTCCTCAACAAATACGGATTCGAAGGTGCCCTCTGGAAACATTTCGATTCACCTCGCGGTGTGGCCTTCAATCAGGAAGGCCACCTCGTTGTGACCGACTTCAACAATCATCGGCTGCTTGTCATCCGGCCCGACTGCCAGTCAGCACGCTTCCTGGGGTCTGAGGGAACCGGAAATGGCCAGTTCTTGCGGCCGCAAGGTGTCGCTGTGGACCAGGAGGATCGCATTATCGTGGCCGACTCCCGCAACCATCGCATTCAGGTGTTCGAACCCAACGGCAACTTTTTATGTAAGTTTGGGACACACGGTAACGGCTTTGGGCAAATGGATCGCCCCTCGGGTATAGCGGTTACCCCAGATGGAATGATCGTGGCTGTGGACTTTGGAAACAACCGAATCCTCATGTTCTGACCTTGTAAggtttgaaatacaaaactgtAGCCGTGGACAAATGGAAAAGAAGATTTTGCACATCTATCAGGAGCAAATTCAGTTTGATTTTAGCGAGGTGACAAGAGTTGTAGGGACTTTATAGTTTTGTACGATTCTTAGTGATCGTGTAACTCCAAATGCTTGCCGTTACAGCACACAGTTTTGGCTGCTGCAGTGTTTTGCTCTTGGTATGTgtcttcaaatcttttttttttttttttttttttttttctcagggaATTTCTTGCATTCTTGAAATATTTTCTCTCTGCATTACACCTACCTCATCTAGCTTATGTATGAATGTACTCGCGTTTGTGCAGAGACCTAGTCCGTGAAGTTTTATAAAGAAACGTCTacctcagtgttttttttttttttcgtagaATGTGAggacaaaaagaaaactaaacaaaatgaagCAATGTTTGGGTATTTGCACAGTTCGCACAATTTCTTTCCTAATTGATACTGTGCACAGAACGCAAGTTATATCCCTGAATGTTTCTCATAACGattgataaaaacaaagctgcatgTTTTGGCAGAAACATAAGGATACCATTTTGATATATCTACTGCtatgttttcttttgaattttgtgtacattttaaatcagaCTTCATCTTTATCTCGTACCTCATCTAAACCTTATACCTCATTTACCGTATTATACCTCTGGGTCCATGAGCCTCATTACATTTACCTCACTTTATGGTCTTTGgaaaaattagaaaattatGCAAGCAGTTACCAAAAATCAATGTTGTACAACTAATGAGACAAATTAGACAAATTATCTtgaatttagttatttaataagACCCTCATGATGTAATCGAGTTTTGCTCTATGACAAGAACATATACccatgattattttaaatgattcaagaGTGAATTGGAGGCTCTTCTTTAAAGAAGATCTTCAGAtcggttttatttttggggaGGGACAAAGAATGTAGACACTAAATGGAATATCTAAGTGTTAAAAATGACCTAGCCCTTATTTTTGTTTCtagagttttgttttctttatttttcagaatttaggcAAGGACAAGTTGATCGACCTAACTGGCAAACAAGGATATaatccattatatatatatatatatatatatatatatatatataacatgttcTTTCAACGTAGGATGTATATTGAGGCAAAGTTCATAAGTCTCATTTCAACCAGCTGCATTAGATCACAAGTTGCTTTTTGTTGTTCTATTGATTACAGCATGGCCTACAGTGCTTCCTGTGCCCGTTTGAGAATGATCCCCAGGGAGACTATTCACTCCGTCAGTGTAACATCATTTGAAAACACTTAGAATCAATTGAGCCCAGTTTGAAATTGGATAGTTTGTGCCTGACTTGTGGGTAACCACTTTAAAGTGTTGTTTGCTTCTGTGTTCAATTGATTaaaagaaaggaggaaaaaaaagaggaagcaAAGCATttggggaaaagaaaaaaaacataatatataaatataaagcacTGGTATACAGCAGAACAAAAGCACATGGCTCTCCCATTATAGTCTGCCTGAACTTCTCTGACAGGAAAGTGCATCTCACCAATGCCGTGTCATAACTAATCACTAAAATCCaagtagtttttttctttctggtaTTAAGCGACCCATGAGAATTTTGTATGTTCCTGTTCTTGCGTGCGTTTTTGGATATTTAGAAGCGGGTGAGCTTTACACACGCTTCTTTTTGAATGCGTGCGCGGTACCGCCTTGTTCGTACACATTTGTGGCAGGCCCACTTACAGATTGCAATGTTAACCTTTGGGGTTAATTTGCACGACGTCTTCTGTTTTTACACTTAGGTAACATTTAAAATCCGAAAATTGTGGGAAAGCTGGACGAAGTGGTCGTGACGATTTGCCCCGCTGTTTTCTTGTAGGCTGCAGTTATCTCGTGTCCCGTCATGAATATTAACGTGCTTGCATGTAGTGTTACCTGTGCCTTCCGTGATGCTAGATAAATCGGAATTGAATGTCTTTGCCAATGGGTGACTATAAGAAGACAGGCACGTGCCAAAAAATTACTCTGAAAGTCACGGATGCGTTGAGCgtttgcttttcatttcttaagTGCATCTTTCccagtcttttttgtttttctttatatacatTACCTCAGAATTTTCTAATTGTGAATCAGGAAGGgtatttatgttaattatgATAACGTGGAGAATAGGCAGGTCGATTTCTGAAAATTGATTAAACATCTGCACATTAGACGATAATAGACGAATAAAAGGACCAGCATGGGTGACGGAAGCCCTTTTGATTAGCTTATGCAATAAAGAATGAACGATTTGCTGCTTCCACCGACACGCATCTTCCCTGTCTTACAGTATTAATATCACATTTGATCTAATGAATATTTAGCTGCAAAGTTTTCTCCCTGAATCCCTGCTCTTTAAGAGGAAacactaaatgtatatttttgcatgctGTAAAGGTCCTTGTAGACGGGTGGATGTAAAATACGATGTTGGAAAACAAGGGGAGGGAAGAAGGAAAAAGTATaatgtaccaaaaaaaaaaaagtttgttagcTTGTGGTGAGTGGTTGACTATATGATTGTATTATTTCTAGATAGCTTTACAGAGTTAAGGTACCTCGTTGAGCTCCATTCAGGTGCCTTTACCACAGCTCCTTAGCTTTAGCTTTTCGAATCGAATCAGAACTGGAAAACTGCCAAAGACCTCGTTCGAATAAAACCTCGGTGTGCGGatgtatttataaatcaatTTTTCACGTTTGCCCAAAGATTTATACGTTTGGCATCAATCATTCTTGTTTTTCAACAAGCTGTCGATGTCTTTAACATAGAGGCGAAACACTCGCGCAAATCCCTGGACGTCGGGTGTTGTGTGTGTAACATGAGATTTTGAGCAGGTGCCCTGCAGGACCAAAGATGGAGTGATGTTTGAATCCAGCTCCCACAGTTCCCCGATGAAAACTGATCTCTAACTGTGTGGCGGTAGAGTTTTATTTGACAAAGGAGCCGGGCAGCCATTTTGTGGGTTGTGATGAAACAAGCGAGATCAGTACAGATAAAGCCACTATATAAAACCCCTTTAGCCCCTTTTGATTTGGACACTGTTAAAAGTGTAAGTTCTACTTTGAGAGACaattcacttttcttttttttaaggactGATCCTACGAGACATCTAGTTACCATCTGGCTTAGTGGACATGAAAGTCAATGTCGTCAAATTCAGTCTCTGTCTTCAGTGTCTTTCAATTTCAGAtcattgcaaatattttttttttttttctttggaccTCCAGTCTCTAATTGTACGGGTTTTGTCACCATTTCTGGTGTATTCCAGCTTATGACTTATTCCttactggggaaaaaaagaaaatgtaagttcAGAATCGTGTGGTCATAGACCCTTTTATGATTGTATTATCttatggaaaaaaagagatgtgTATACACATTAAAACAACTCAGGTAGCTTTGTAGAGATTTGAGATTTGATTAAAATTCAATATTTGTTTCCTACAGTTTGATAGTGAATCCTTTGTTAGTACCTCATGAGCTTTTGTGTGTCGTTTTGTTGGtataaaatgctgttattgAAATCCATGGGATCCTTTTCAACCATGTCACAGTCAACGGTCAATGAGGGGGTGAACAATTCATAACCTTTACACGAGCTTGTCTCAGTTCAGCATTCTTCCCATAATACCAACTTGATTTAATAAATCGAAACCTCACAAGTAACCGTTTACCTTTTTGAATGACGGATGCATCATGATAGATGCGTTTTTCTAAAGGCTGCTACAAAATTCATTTGCCTTTTGATGAGCAAAAATGCCTTgaagcttgaaaaaaaaaaaaaaaaaaacaggttttcaAGATCTTTTAAGGGCAACACTCCATCTCTAAATTAGAATCATGGTGGTAATGGACGTTTAGACGCCATATCCTGGCACTGAAATTTGATAAAGAGGTGTGAAGAGATTCAAAGTTCTGACCTGGAATCGGTTTTGCCTTTTAAAATACAACGATTAGGGTAGAATCAAAGTAGCAAATGCCGATTCCAGGTCAGGGATCCTCTCAGGTGGATGATTTTGGTTCAGGAGCCCTCCAAGAGGCCCACTAATCTctccatttctttctctttgtttcataACTCTTACCATCACACCATCTATCGCCCCCTCATCCGAAACAACAGAGCAGTCATTAGTCTCTGAATAAGGCTGACGAGACCATATGAAATATGTAGTGGTCTGCAGTCTTGTTCAATTGTCTTTGTGGACTTTAAACAATtcctatgcatttttttttatgtctggtTGTTTACgatttaaataaagttgtaCCTCTTTGGATCCTGTA

Function

symbol description
trim71 Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM71

GO:

id name namespace
GO:0072089 stem cell proliferation biological_process
GO:2000177 regulation of neural precursor cell proliferation biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0060964 regulation of gene silencing by miRNA biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0010586 miRNA metabolic process biological_process
GO:0000932 P-body cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
K12035 TRIM71; tripartite motif-containing protein 71

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261087.1 True 7720 mRNA 0.44 4 9678223 9702267

Neighbor

gene id symbol gene type direction distance location
ccka LOC107751914,LOC107704089,LOC107601665,LOC107657574 coding downstream 49177 9627246 ~ 9629046 (-)
ulk4 ulk4,LOC107723070,LOC107704090,LOC107570990,LOC107668185,LOC107657572,LOC107564876,LOC107573651 coding downstream 154226 9387510 ~ 9523997 (-)
cmtm8b LOC107749122,LOC107702023,LOC107564882,LOC107751904,LOC107661990,LOC107570991 coding downstream 355694 9319555 ~ 9322529 (-)
LOC122360802 LOC107749154,LOC107596765,LOC107686954 coding downstream 520802 9149115 ~ 9157421 (-)
LOC122360027 LOC107751895,LOC107656720 coding downstream 529224 9145900 ~ 9148999 (-)
tcaim tcaim,LOC107657582,LOC107723074,LOC107751885,LOC107601675,LOC107704100 coding upstream 3573 9705840 ~ 9714651 (-)
abhd5a abhd5,abhd5a,LOC107657580,LOC107751913,LOC107704099,LOC107723076 coding upstream 76050 9778317 ~ 9787092 (-)
snrka snrka,snrk,LOC107723077,LOC107551216,LOC107657578,LOC107601674,LOC107704097,LOC107751880 coding upstream 116319 9818586 ~ 9858631 (-)
entpd3 entpd3,LOC107732432,LOC107657573,LOC107751912,LOC107704086 coding upstream 202206 9904473 ~ 9914342 (-)
ddc ddc,LOC107551213,LOC107746968,LOC107601670,LOC107751878,LOC106605416 coding upstream 227069 9929336 ~ 9945606 (-)
G111045 NA non-coding downstream 1718 9674864 ~ 9676505 (-)
G111025 NA non-coding downstream 54104 9623700 ~ 9624119 (-)
G111024 NA non-coding downstream 57770 9620119 ~ 9620453 (-)
G111021 LOC102788557 non-coding downstream 71150 9599932 ~ 9607073 (-)
G111005 NA non-coding downstream 290832 9386179 ~ 9387391 (-)
G111048 NA non-coding upstream 52048 9754315 ~ 9754980 (-)
G111097 NA non-coding upstream 173125 9875392 ~ 9875664 (-)
G111298 NA non-coding upstream 1027901 10730168 ~ 10730415 (-)
G111329 triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902 non-coding upstream 1089297 10791564 ~ 10793616 (-)
LOC122361039 NA non-coding upstream 1221848 10924115 ~ 10924764 (-)
G110974 NA other downstream 405618 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 526040 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 1042001 8633350 ~ 8636222 (-)
G110556 NA other downstream 1361538 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 1375978 8298789 ~ 8302245 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 174944 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 1043309 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 1155253 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 1567353 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 1630908 11333175 ~ 11386993 (-)

Expression


Co-expression Network