rundc3b (rundc3b,LOC107666772,LOC107686653,LOC107719153)


Basic Information

Item Value
gene id rundc3b
gene name rundc3b,LOC107666772,LOC107686653,LOC107719153
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20139412 ~ 20154648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261110.1
CTCGCTTATTCCATTTCTATGGCTCCAGTGAGAGTCAGTCAGCTGGAGACTGATCCAAAGCATCAGAAGAGAAAAAGACGTGAGGAAATAAACGGTTATCATGGCATCGTTAAATCTCGGCTTCAACGGGGCTCGCAAAAAAGCGGTAGCTCGCATCAGAGCCGTGGAGAGGAGGAATCTGATCACCGTGTGCAGGTTCTCAGTGAAGACCCTCATCGATCGCTCGTGCTTTGAGACGATAGACGACACATCTGCTGAGTTCATCAACTTTGTCTCCATTCTAGAACATATTCTCAGCCATAGACTGAAAGGTCAGGTCAGCTGGTTTGGCTACGAGAGCCCGCGCAGTTTCTGGGATTACTTGCGTGTGGCATGCAGTAAAGTCCCTCACAGCTGCATCCACAGCATCGAGAACATGGAGAACGTCCGCAGCTCTAGAGCGAAGGGTCGTGCCTGGATAAGAGTGGCGTTAATGGAGAAGCGTTTGTCTGAATACATCTCTGCAGCTCTGAGAGACTTCAAAACTACAAGGAGGTTTTATGAGGAGGGGGCTGTTGTTCTGGGTGAGGAGGCGGGGCTTCTGGCAGACACTCTGATTGGACTGAATGCCATTGACTTCAGTTTCTGCCTGAAAGGGGAGGGGCTTGATGAGAGCTGTCCCGTCGTCATTGACTACACACCGTACCTTAAATTCACACAAACTTCTGACAGCATTAGCAGCGATGAGGAGGAAATGAGAACACTGGGCAGCAGCGGCAGTGAAGCAGGCACTCCAGAATCCCACATGGCTGCCAGTCTGATGGCCGATCAGAGCACCTGGTACAGCAAGAGCAAAAGACTAGAGCAGAAATACAGAGTCGTGCTGGAACAGAAGGGTTATCTGGAGGAGCTGGTGCGTCTGAGGGAAGCTCAGCTCTCTGAGTCTGTCGCTCAGAATAAATCTCTACTGCAGCGACTCACAGACACCGAAATCAGCCACAAACTGGAGAAAGAGCAGCTGGAGATCATCATACTGGAGCTGCAGGATCAGCTgaCGGTGATGAAAAACCATGACCTTCGCTCCAGACAGGAGCTTACCTCGCACCTGACCAACCAATGGCCCTCACCTGGTGCTTTGGATACCAATGCGGTTGCCTTGGATACGCTTCTGTACAGGAAACGCACAGGACCATGGGAAGACAAAAGCTTCCAGAGTTTGGAGCAGCTTTCTGCAGATATGAGTCTCTCTCAGATGTCTCTGGAGCCAGCACAACTGAACACACACAGTCTGGACAGCAAGGCAGGACTTACACACTGGCACAGAGAAGGGAAAGAGGATACTCCGTCTCTGAGGGGTTTGTGTGGCTCCTTAACCTCAATGGCCAGTTACAAATCTCTGGCCAGTCTGAAGTCCAGTGAGTATCTGGCCAGTCCAACAACAGACATGACCAGCCCAGGACTGACCCCATCTTGAGAGACAAGTATGGACATATAAATACGTACACAAACACCCCAACTTGTTTCAGACGGTGTGGGCTTCGAATTGCAGTGAAAAACGAAAAGCTACCTATCGGCACCGTCCTCAGAGCTTCTAAGAGACATTTCAACTAGACAAGATGAAACCCCATTTtggtttttagtttaaattgaaGTGCAGTTTCATTTTCAGATGTGAACATTCGGTCGCTGAAGTCCACAGCTAGCGtaagcattagcattagcatagTGAAGCGTAATGTATCATGATGAATGACAATCTCGACTCAGGACGTCAGTGAATTTCAGCCGTTTGTGAAATTTCGAATGTCTGCTGTTTTTTGGAAAGTCCACAGATAAAAAGGTTTTCACggtgttttagtttttgcttcTGTTTCATAAAATTTGTCCTGTGTGGAATTATCCTGAATtgctttattacttttaaatttgatttcattGCATGTCTCAATATCTGATTTGGTTTtagatttattgtttaatttatttaatattttattgtattttaactttaacttaatttagttaaatctcttattttatgttatgttttctcctcttaaaaacactttaatgtaattattaaatacattctgACCCTCtctacacattaaaaaaaacatgcttagtaaaattaacattttaaactattttctgACAGCTttcaaaaatatcaacaaacaTGAAGCTGTGAAATTTCAGTAAGAAAAATATTACCAAATTATATTCATCAAGAATTATTTCAGTTGCAAACAGTGGGTGTTCCATGTCAGAATGGAAAACTGGAGCCCTAATTCTATTAAATCTCATATGATTATGACAGAAATGTTAACAACAGTACTGCTTTGTTCATATGCCACTCCATTTTTAGGGAGCGAGAGAAATATGATTTGAGATTTTTCTCTGGTGTGCTGGATGTGGATGctgataatctttttttttttttcttgtctctgGCTTTTAACTGAAGTGTTTAAGATTCACTCTGTCCTCTTTCATGGAGAGGTCTTACATATTCATCAGTTCTGTGATTTACATAATCATACAGCACTCAAAcatgattttgcattttttttttccaccgtCGCTCTCAGATAGTGGCTAATGCGCACTGGAGTAAAGCATTgccatgcatttatataaataaataaggatgATAAATGATATGGTGCATAGTGGACTTGAAAAAGAATGTATTCACAATCAAATATCTTAGCTTAATCTGTAAACGTCTGAACTAGTCTTGTCAATTTAATGGAATTAATTATAGAAAAATACGACTGAAAAATTACTTCAGCTAATCAATTCCTCTAATCTGTATGTAAATGCTGTAATTTCCTACCTCCAGAGCAATTCACTTTGTTTTTGACTGTATGACGCTGTGGACTATAGGCCGGTGATGTTCAATGACACGgacataaataatttattgacTTCAAAGCCACTTTTTTAATGTCCattcaatgcttttttttcatccgCCACCATTCTCTTCATTAGAGAGCTTTTTTTTGTCGTTAATTTGATTATAAAACCAGAATGTACAATTAACGTgcagtatttaattaatttttaatccaTTGACTGCCCTAGCCTGAACCCTTTTACTTAAAAAGAAGGattaattttagaattaatttgtAGAGTTGCGAAGTTCAAGTTGAATACTCCTAATACCCGATCATTCTAAAAAagattgcattaaatattgctTGTGTGACTGGATCATAAAACAGACGCGTTTATAAAATCAGTTTAAGCTGTGGGTTctgtataaaaatgattgaaagcGATAAGAAACGTCTGATTGCTCGTGAGCATCGGTGCAGTCATAACAGAAATCCCAGGGAAACACGTAAGCAGGATTCCCTTTGTTGCCGCTCACCAGAAACAGTCTCGTCAGCTCGTACGATGCCTTGCTGGTTATCCATGTTCTTAGTGTTGGAGAATGTCTCGTCTGCCTGTGTGTGACTTCAGTTCTGTGCCGCAGAAATACACGTCTTACAtgtgaaatgcatgttttacaTTGTTCAGAGCTCGTCTTTTCAGAAGCCAGTACATCTAAATGTGCatctcaaggtttttttttggaatctcTTACAGCACTGTTTGatctaaaatgtgcaattaaatgTGTATAGTGGAATGAAGGAAATGCATTTCAGTATTTAAGTGTTACTTTTCAGTTTCAAGTTTTAGCCTTCACATTTGAAAAGGTAACATGTTTAAAACTTAGCAGAATTGTCGCCTTTACAGacatttttgaatgtattttcttCCTCAAtgctttaaaatctgtttttgtgagtttttgttcattttctgttGTACGGTGACAGAAATAAATGGGGCGAGGATAACGAGGGCGCACTGAGATGAATATCATATATTCAGCTAACTATAATTTTGCCTCAATATGTTTAGTCAAAATTTAACTTCATGTCCTCATCTACGATCatgttttttcaataaatacaaacttgtctcattg

Function

symbol description
rundc3b Is expressed in brain; gut; habenula; and yolk syncytial layer. Orthologous to human RUNDC3B (RUN domain containing 3B).

NR:

description
PREDICTED: RUN domain-containing protein 3B

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261110.1 True 3967 mRNA 0.40 11 20139412 20154648

Neighbor

gene id symbol gene type direction distance location
dbf4 LOC107666861,LOC107719134,LOC107592429,LOC107686229,LOC107714332,LOC107592324 coding downstream 5471 20129043 ~ 20133941 (-)
adam22 adam22,LOC107719137,LOC107714333,LOC107666740 coding downstream 11449 20076807 ~ 20127963 (-)
mrpl32 mrpl32,LOC107592435,LOC107666771,LOC107686307,LOC107714338,LOC107735708,LOC107580730 coding downstream 98051 20039947 ~ 20041361 (-)
ccdc127a ccdc127a,LOC107686768,LOC107719164,LOC107556965,LOC107592531 coding downstream 100225 20036348 ~ 20039187 (-)
rnf144b rnf144b,LOC107592436,LOC107686312,LOC107556966,LOC107714339 coding downstream 112407 20022244 ~ 20027005 (-)
polr3glb polr3gl,polr3glb,LOC107666760,LOC107714326,LOC107592290,LOC107686116 coding upstream 84484 20239132 ~ 20243565 (-)
si:ch211-135n15.2 LOC107719151,LOC107592495,LOC107666737,LOC107714311,LOC107686628,LOC107592633 coding upstream 106187 20260835 ~ 20264890 (-)
dpy19l1l dpy19l1l,LOC107666881,LOC107719125,LOC107592414,LOC107737812,LOC107686065,LOC107592262 coding upstream 151170 20305818 ~ 20313239 (-)
herpud2 herpud2,LOC107686057,LOC107600485,LOC107719122,LOC107592253,LOC107737813 coding upstream 224532 20379180 ~ 20385456 (-)
pkdc si:ch211-215k15.5,LOC107737834,LOC107592943,LOC107686716 coding upstream 231429 20386077 ~ 20387616 (-)
G114663 cldn12,LOC107682396,LOC107686255 non-coding downstream 35142 20101044 ~ 20104270 (-)
G114626 LOC107714343,LOC107666800,LOC107592439,LOC107719142 non-coding downstream 167455 19959867 ~ 19971957 (-)
G114611 NA non-coding downstream 419476 19719186 ~ 19719936 (-)
G114608 NA non-coding downstream 446019 19693138 ~ 19693393 (-)
G114607 NA non-coding downstream 455482 19683622 ~ 19683930 (-)
G114718 NA non-coding upstream 19515 20174163 ~ 20244153 (-)
G114741 NA non-coding upstream 61455 20216103 ~ 20217581 (-)
G114747 NA non-coding upstream 90373 20245021 ~ 20245239 (-)
G114768 NA non-coding upstream 148335 20302983 ~ 20305444 (-)
G114771 NA non-coding upstream 187429 20342077 ~ 20409610 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other downstream 481688 19596432 ~ 19657724 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other downstream 718318 19416962 ~ 19421094 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 1318302 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 1441005 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 1468138 18669607 ~ 18671274 (-)
G114715 NA other upstream 12147 20166795 ~ 20177758 (-)
G114793 NA other upstream 287317 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 481477 20636125 ~ 20650937 (-)
G114901 NA other upstream 497329 20651977 ~ 20653574 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other upstream 857959 21012607 ~ 21017105 (-)

Expression


Co-expression Network