pdp1 (pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551)


Basic Information

Item Value
gene id pdp1
gene name pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16688215 ~ 16693128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261126.1
CGCAGCTCTGTAAGTGGACCAATCATCTCGTCCCGTGGGAGTGGAGGCAAACCAGGCTCTCAGGATGCGGGAGGGGTGAGCGCAAATGAACTAATGTAGTCCGATCAAACATCGATCGCAAACTCAGTCGTCCACTAATATCCTCAGGTCCTTTGAGGGTAAGGTCAAGTTATCATGGCTGCTACCTCCCAGTTGTTCAGGTTCATCCATGGCAGGAGGTTTGGTCAGATCCTGCTGCCAGCCATAACATGCCAAAACTGTAGCCGGTCTCCTCGTCCATGCGTCAATTCAACTCAGCTGCACAGCTCTGAACAAAGATGGCGGCACCAGGTGCGAGGATACAGGACCTCACCTGCATGGCGCACCTACTACTTGACCCCACCTCAGGTTAACAGCATACTAAAAGCTAATGAGTACAACTTCAAAGTTCCTGAGTTTGATGGCAAGAACCTCAGTTCGGTCATGGGCTTCGACAGCAACCAGCTACCGGCAAATGCACCCATCGAGGATCGCCGAAGTGCAGCAACATGCTTGCAGACCCGTGGCATGCTTTACGGTGTATTTGATGGCCACGCAGGCTGCGCATGTGCTCAGGCACTCACCGAGCGCCTCTTCTATTACATAGCCGTCTCATTGCTGCCACATGAGACGCTGATGGAGCTGGAGAACGCGGTGGAGAGCGGACGACCTCTTCACCCGATACTGCAGTGGCACAAGCATCCCAATGACTACTTCAGCAAGGAAGCTTCACGGCTCTACTTCTCCAGCTTGCGCACGTATTGGCAGGAACTGCTGGATCTGAGCGTTCCTGGGGAGCAACCAGATGTTGCTGAAGCTCTCGTGACTGCCTTTAAAAGGTTGGACAATGACATATCCCTTGAAGCGCAGGTTGGCGACCCGAATGCGTTCTTGCACTACTGGGTGCTCCGTGTTGCATTCTCAGGTGCCACAGCATGCGTTGCACACATCGATGGTAATGAGCTGCATATTGCCAACACTGGAGATTGCCGGGCAGTCCTGGGTGTACAGGAACCCGATGGCTCTTTTTCTGCCCTCACGCTCACCAATGACCACAACGCGCAGAATGAATCTGAGATGAAGCGCGTGCGATCCGAGCACCCGCTTTCTGAGGCCAAAAGTGTGGTGAAGCAGGATCGCCTGTTGGGGTTACTCATGCCATTTAGGGCCTTTGGAGATGTTAAATTCAAGTGGAGCATTGAACTGCAGCGCCGCGTTCTTGAGTCTGGACCAGACCAGCTCCATGAGAATGAGCACGCCAAGTTCATCCCACCCAACTATCACACACCACCCTACCTTACGGCGGAACCGGAGGTGACCCGACACCGCCTCCGTCCACAGGATCGTTTCCTGGTGCTGGGCTCGGACGGGCTGTGGGAAACGCTACACAGGCAGGAGGTGGTGAGGATTGTGGGTGAGCATCTCACTGGAGTTCACCAGCAGCAGCCAGTCAGTGTCGGCGGCTATAAGGTGACCTTGGGTCAGATGCAGGGATTGTTGCAGGAGAGGAAAGCTCGCATCTCCTCCACCTTCGAGGACCAGAATGCAGCTACGCACCTGATTCGGCACGCGGTGGGGAATAACGAGTTCGGGATGGTGGACCATGAGAGGTTGTCAAAGATGTTAAGCTTGCCAGAAGAGTTAGCCCGCATGTATAGGGATGATATCACAATCATTATAGTGCAGTTTAACCCACATGTCATCGGTGGACAGTAGAAGTGGACACTCTTTCTTTCACATGTTCTGTTACATACATTATCAATTCTAATCTTACGCACAATCTCATCACGCTGCATTATCAATAATATCAGCACGGCAAAATGTTACCTATACCGGTGGAATGTATTACTCtgagtgtatttttatgttcatttctaCAATAGGTGAGCGGTGTTGATTCCCAGTTTTATGCGGAATtaagccaaaaagaaaaaaatatcccGAGATCATCCCAGACTTATTTTCACAATCAGAATGCAGCACAAAACCATAAATCAAGACTGGAAATGTACTAGTGTAGGTTCAGCGGATTTTGCACTGAGGAGAGCGTTTATATACTGCTTGTGTTGTGCCAAAATTTGCTTTTATGTtgtatgcttttaatttttgaatgaatgaaaaaggaaagtaaaacaaatgtcatttaaaatggcaaGTGAGAAAGAATGAGGATAGAAAGCAAAAGATATGTACTTTTAAGTTGAAGTGCTCTGTAAATGGGATATGTTGAATAAGAAGATACCTTAAAGGGACAATACACCCCAAAGTGTAAATCCTGTTGTTTTTTCACACTGATGTAAttctaaacctgtatggctTTGTTCATggctttcattttatatatagtaataatggCTTTTTTGTGTCCTACATGCATGTTTAGAACAACATAggagtgagtacattttcattattgagTTCGCTATCTTAACGTTTTATGTAGGTTTTAATGAACCAAACAAGCTGCTAATGCCACTAATTATCCAGGGACATGAAAGCAGCAGTGTTTTTTtcgtctttttctttttttatgcaaagtattttattttagtaccaTTTGTATTCTATCTCTATTTGACTGTTAAGTTCTTCTTTTTGTACGGCATGCCTTAGTAGATGCAGGTTTTCATGAAGCACGTCTTGGAGTTCAAGTGTCATCAAAACATGGCTTGTGCAACAACTTTATCTTCTCATTTCTGTAAAAGTCCTGATAAAGAGGcctgttatttttttacctgTACGTGGAATCAGAGTCATGGTTTGCAGTAAGGTAGAAGGTCAATATTGTAAAGACACTAAcgtgtaaaatgtaattaaagacATAACTGCTACTGCGCACAAAAGATTCTCTTGttactttcttatttttcttacctCAGTCCCTCACAGtgatattgtatttataatgctGCTGGCCGTTGCTGAAATTCCGGTTTGGTTTTCTGATGTGCGCTGAATTTCTCTGAAAGGTGAAGGAGAGATATTTAAGGAACTAGAGGTTAATGACACAACAAACCAGATATGCTTATGCTTACGCTTCTTATAGGACGCAAACGCACCTATGTGATTACACTACAGTGGGGAAATGTGAATCTGAAGGATTTTTCAGTTGTGTTTCTAAAGTAATTAATTTGGTTTCCATGTATTTTTTCAGGTGTCACAACATTTTTCAAGTGATTACTGGCCACAGGGTAGAGATTAGAGTTAAAGTtcaatgtcacttttttttttttgagggttATTGAATAAGGTTAAAACCATAACTCTGTGATTGTGCTTTCTTGCCTGTTCTCAGTATGTTCTCTGCTCTTGCACAAGAACGCAGCTGATTGCTACATGAAATGTTTCGAATGGTAGTCAATCAGCAGTGTAATTAATGCAATTCTGTAATAAAGTTATAGGCCTGCTAAAGTGTAAATACACTTTATACTTGAAGTAAATGTATGCTGCAGCTTGTTAGTGTTTAATATTTTGCGGCAtgtcacaaatgtatttaacaatattactgtgtGCATGACTTCTGCAAGTACTCTTGccttttgtatttcaaatgttttaataaaaatgtaactaagcATTA

Function

symbol description
pdp1 Predicted to enable [pyruvate dehydrogenase (lipoamide)] phosphatase activity. Predicted to be involved in positive regulation of pyruvate dehydrogenase activity and protein dephosphorylation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in obesity and pyruvate decarboxylase deficiency. Orthologous to human PDP1 (pyruvate dehydrogenase phosphatase catalytic subunit 1).

NR:

description
PREDICTED: pyruvate dehyrogenase phosphatase catalytic subunit 1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261126.1 True 3598 mRNA 0.44 2 16688215 16693128

Neighbor

gene id symbol gene type direction distance location
rnf41l rnf41l,LOC107687809,LOC107723454,LOC107593678,LOC108443277 coding downstream 37902 16646546 ~ 16650313 (-)
sgk2b sgk2b,LOC107687822,LOC107595908,LOC107706345 coding downstream 112779 16571366 ~ 16575436 (-)
l3mbtl1b LOC107687798,LOC107706333,LOC107723564,LOC107657713,LOC107593673 coding downstream 117777 16561699 ~ 16570438 (-)
LOC122360041 LOC107687802,LOC107595942,LOC107706353 coding downstream 128181 16557546 ~ 16560034 (-)
megf8 megf8,LOC107595817,LOC107687796,LOC107593670,LOC107657710 coding downstream 148602 16514357 ~ 16539613 (-)
ino80c ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731 coding upstream 4193 16697321 ~ 16698849 (-)
tmem245 LOC107687814,LOC107595951,LOC107706205,LOC107723436,LOC107657721,LOC107593683 coding upstream 90892 16784020 ~ 16799200 (-)
LOC122360322 frrs1l,LOC107595962,LOC107657722,LOC107723406,LOC107593684 coding upstream 106232 16799360 ~ 16804107 (-)
alg2 alg2,LOC107706186,LOC107595974,LOC107723517,LOC107687815 coding upstream 124598 16817726 ~ 16820755 (-)
erp44 erp44,LOC107706132,LOC107593692,LOC107723539,LOC107596038 coding upstream 222390 16915518 ~ 16928686 (-)
G113470 cdh17,LOC107595837,LOC107706528,LOC107687825 non-coding downstream 8103 16679684 ~ 16680112 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding downstream 80535 16606714 ~ 16607680 (-)
G113433 NA non-coding downstream 98601 16588685 ~ 16589614 (-)
G113405 NA non-coding downstream 134357 16552608 ~ 16553858 (-)
LOC122360769 NA non-coding downstream 193476 16488118 ~ 16494739 (-)
G113473 NA non-coding upstream 802 16693930 ~ 16694290 (-)
LOC122360493 NA non-coding upstream 31290 16724418 ~ 16737282 (-)
G113504 NA non-coding upstream 128502 16821630 ~ 16822180 (-)
G113569 LOC107706170,LOC107657725,LOC107593690,LOC107723503 non-coding upstream 195193 16888321 ~ 16892578 (-)
G113567 nr4a3,LOC107687818,LOC107706170,LOC107723503 non-coding upstream 201224 16894352 ~ 16895923 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 6037 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 448709 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 459749 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 546980 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 674464 16012964 ~ 16013751 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1119242 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1502343 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1664289 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1799498 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 1956391 18649519 ~ 18650609 (-)

Expression


Co-expression Network