ino80c (ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731)


Basic Information

Item Value
gene id ino80c
gene name ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16697321 ~ 16698849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261129.1
TGGCACTTTCTTATTACTTCCGGGTGAACGGGATGTTGTGAAAAGCTGCAGGCTAACGCGTTTACCATATTTCAGGTTATGATTGTTAAAAGTCGATGAAGACAAATGTCTGCCTCTTCTGAACCGGGAGTATCAAAAGCAAGGGAATTAAATCCAGCGACGCTCTCTGCGGGTAAAGCTCAGACAGCGGCGGCGTTAGTTGCTCAGGCCCGGAGCAAGAAACGAGCCGTCAGTCCCGCGACCCACACAACCCCGCagccaaacaacaacaacaacagcagcagcagcagcaaaaagaagaaaacaccaCCCGCGCCTTCAACTGCTCAGACTCAGAATTTGTCACAGGTTGCTCCAGTGGAGTCGACCTCTGAAGGAAAACCAGTGGGGGCTGTTGACGTAGAGACTTCCACCAAATGTCTTCCTTTTAAAAACCCCAGCTTTGTGCACTCAGGTATTGGTGGAGCAGCAGCAGGGAAGAAAAATCGGACGTGGAAAAATCTCAAGCAGATTTTAGCAGCGGAGAAAGCGCTGCCCTGGAAAATCACTGATCCTAACTaTTGCAGCATAGATGCGCCTCCTTCTATGAAACCTGCTAAAAAGTACTCCGACATATCAGGTCTGCCGGCAAACTACACTGACCCTCAGACTAAACTGCGCTTTGCATCGACAGAAGAGTTTTCCTACATCCGTCAGCTGCCCACAGATGTGGTGACTGGATACCTGGCTCTCCGTAAAGCCACCTGCATCGTGCCATAAGAGAGAATATAAAACTTTtcttaatgcacttttaaatgcTGTCTGACCAATGGATGTGAAGGACTGACATACCTCTATCACGTTCTGTTccttgtgtatgtttgtgtatgttttactgttgccttttttaatttgattaccACACAATagttacttctttttttttttaggttttcagTCTGTTGTTTAAGTGAACTACTTGTAGTCTTATGATGTTGGTTTGGCTAAATGAAATACAAGATCGTCTGTATGTGTAACTTtggtaaaaaaagaacaatacaaAGCAGTGTTGTCACA
>XM_043261130.1
CTGGCACTTTCTTATTACTTCCGGGTGAACGGGATGTTGTGAAAAGCTGCAGGCTAACGCGTTTACCATATTTCAGGTTATGATTGTTAAAAGTCGATGAAGACAAATGTCTGCCTCTTCTGAACCGGGAGTATCAAAAGCAAGGGAATTAAATCCAGCGACGCTCTCTGCGGGTAAAGCTCAGACAGCGGCGGCGTTAGTTGCTCAGGCCCGGAGCAAGAAACGAGCCGTCAGTCCCGCGACCCACACAACCCCGCagccaaacaacaacaacaacagcagcagcagcagcaaaaagaagaaaacaccaCCCGCGCCTTCAACTGCTCAGACTCAGGTTGCTCCAGTGGAGTCGACCTCTGAAGGAAAACCAGTGGGGGCTGTTGACGTAGAGACTTCCACCAAATGTCTTCCTTTTAAAAACCCCAGCTTTGTGCACTCAGGTATTGGTGGAGCAGCAGCAGGGAAGAAAAATCGGACGTGGAAAAATCTCAAGCAGATTTTAGCAGCGGAGAAAGCGCTGCCCTGGAAAATCACTGATCCTAACTaTTGCAGCATAGATGCGCCTCCTTCTATGAAACCTGCTAAAAAGTACTCCGACATATCAGGTCTGCCGGCAAACTACACTGACCCTCAGACTAAACTGCGCTTTGCATCGACAGAAGAGTTTTCCTACATCCGTCAGCTGCCCACAGATGTGGTGACTGGATACCTGGCTCTCCGTAAAGCCACCTGCATCGTGCCATAAGAGAGAATATAAAACTTTtcttaatgcacttttaaatgcTGTCTGACCAATGGATGTGAAGGACTGACATACCTCTATCACGTTCTGTTccttgtgtatgtttgtgtatgttttactgttgccttttttaatttgattaccACACAATagttacttctttttttttttaggttttcagTCTGTTGTTTAAGTGAACTACTTGTAGTCTTATGATGTTGGTTTGGCTAAATGAAATACAAGATCGTCTGTATGTGTAACTTtggtaaaaaaagaacaatacaaAGCAGTGTTGTCACA
>XM_043261131.1
CTGGCACTTTCTTATTACTTCCGGGTGAACGGGATGTTGTGAAAAGCTGCAGGCTAACGCGTTTACCATATTTCAGGTTATGATTGTTAAAAGTCGATGAAGACAAATGTCTGCCTCTTCTGAACCGGGAGTATCAAAAGCAAGGGAATTAAATCCAGCGACGCTCTCTGCGGGTAAAGCTCAGACAGCGGCGGCGTTAGTTGCTCAGGCCCGGAGCAAGAAACGAGCCGTCAGTCCCGCGACCCACACAACCCCGCagccaaacaacaacaacaacagcagcagcagcagcaaaaagaagaaaacaccaCCCGCGCCTTCAACTGCTCAGACTCAGAATTTGTCACAGGTTGCTCCAGTGGAGTCGACCTCTGAAGGAAAACCAGTGGGGGCTGTTGACGTAGAGACTTCCACCAAATGTCTTCCTTTTAAAAACCCCAGCTTTGTGCACTCAGGTATTGGTGGAGCAGCAGCAGGGAAGAAAAATCGGACGTGGAAAAATCTCAAGCAGATTTTAGCAGCGGAGAAAGCGCTGCCCTGGAAAATCACTGATCCTAACTaTTGCAGCATAGATGCGCCTCCTTCTATGAAACCTGCTAAAAAGTACTCCGACATATCAGGTCTGCCGAAGAGTTTTCCTACATCCGTCAGCTGCCCACAGATGTGGTGACTGGATACCTGGCTCTCCGTAAAGCCACCTGCATCGTGCCATAAGAGAGAATATAAAACTTTtcttaatgcacttttaaatgcTGTCTGACCAATGGATGTGAAGGACTGACATACCTCTATCACGTTCTGTTccttgtgtatgtttgtgtatgttttactgttgccttttttaatttgattaccACACAATagttacttctttttttttttaggttttcagTCTGTTGTTTAAGTGAACTACTTGTAGTCTTATGATGTTGGTTTGGCTAAATGAAATACAAGATCGTCTGTATGTGTAACTTtggtaaaaaaagaacaatacaaAGCAGTGTTGTCACA

Function

symbol description
ino80c Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80C (INO80 complex subunit C).

NR:

description
PREDICTED: INO80 complex subunit C

GO: NA

KEGG:

id description
K11667 INO80C, IES6; INO80 complex subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261129.1 True 1056 mRNA 0.45 5 16697321 16698848
XM_043261130.1 False 1045 mRNA 0.45 5 16697321 16698849
XM_043261131.1 False 1011 mRNA 0.45 5 16697321 16698849

Neighbor

gene id symbol gene type direction distance location
pdp1 pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551 coding downstream 4193 16688215 ~ 16693128 (-)
rnf41l rnf41l,LOC107687809,LOC107723454,LOC107593678,LOC108443277 coding downstream 47008 16646546 ~ 16650313 (-)
sgk2b sgk2b,LOC107687822,LOC107595908,LOC107706345 coding downstream 121885 16571366 ~ 16575436 (-)
l3mbtl1b LOC107687798,LOC107706333,LOC107723564,LOC107657713,LOC107593673 coding downstream 126883 16561699 ~ 16570438 (-)
LOC122360041 LOC107687802,LOC107595942,LOC107706353 coding downstream 137287 16557546 ~ 16560034 (-)
tmem245 LOC107687814,LOC107595951,LOC107706205,LOC107723436,LOC107657721,LOC107593683 coding upstream 85171 16784020 ~ 16799200 (-)
LOC122360322 frrs1l,LOC107595962,LOC107657722,LOC107723406,LOC107593684 coding upstream 100511 16799360 ~ 16804107 (-)
alg2 alg2,LOC107706186,LOC107595974,LOC107723517,LOC107687815 coding upstream 118877 16817726 ~ 16820755 (-)
erp44 erp44,LOC107706132,LOC107593692,LOC107723539,LOC107596038 coding upstream 216669 16915518 ~ 16928686 (-)
tex10 tex10,LOC107657731,LOC107723457,LOC107706105,LOC107596045,LOC107593696,LOC107689903 coding upstream 252330 16951179 ~ 16968820 (-)
G113473 NA non-coding downstream 3031 16693930 ~ 16694290 (-)
G113470 cdh17,LOC107595837,LOC107706528,LOC107687825 non-coding downstream 17209 16679684 ~ 16680112 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding downstream 89641 16606714 ~ 16607680 (-)
G113433 NA non-coding downstream 107707 16588685 ~ 16589614 (-)
G113405 NA non-coding downstream 143463 16552608 ~ 16553858 (-)
LOC122360493 NA non-coding upstream 25569 16724418 ~ 16737282 (-)
G113504 NA non-coding upstream 122781 16821630 ~ 16822180 (-)
G113569 LOC107706170,LOC107657725,LOC107593690,LOC107723503 non-coding upstream 189472 16888321 ~ 16892578 (-)
G113567 nr4a3,LOC107687818,LOC107706170,LOC107723503 non-coding upstream 195503 16894352 ~ 16895923 (-)
G113587 NA non-coding upstream 211486 16910335 ~ 16911882 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 15143 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 457815 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 468855 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 556086 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 683570 16012964 ~ 16013751 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1113521 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1496622 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1658568 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1793777 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 1950670 18649519 ~ 18650609 (-)

Expression


Co-expression Network