hoxa2b (hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758)


Basic Information

Item Value
gene id hoxa2b
gene name hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11619513 ~ 11630905 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261169.1
ATTCTACGGAGCAGTGGGCAAACTGACCATAAATGCGTAAATAAACTAGCCCGTCCCAGAGAGTGAGGCGTTCCTCTCGGACTTTTTTCGATCAATCACACAGACAGTGGCTTCTTTTGATTAAACCCCAAATTGTCATTGGACAGAGGTAATCATGTGACAAGCAATACGGTCCAATTTCAACCTTGTCTCCATGAAAGCAATAGTTTAATGGCACCGCGGTCCCCATACGGCCGTAATcagcaaaatagttttttttttaacccggcacgatatttcattttatcttcCTTGGGTCACAAATTTGTGAGCGGCGAATTTGGAAGACTTGGAGGAGATGAATTACGAATTCGAGCGAGAGACGGGTTTTATCAATAGTCAGCCGTCGCTCGCTGAGTGCCTGACATCTTTTCCCCCTGTCGGTGATGCATTTCAAAGTTCATCAATCAAGAGCTCGACGCTTTCACAGTCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCAAGCCTGAACCCCGGCAGCCACCCTCGCCACAGCCGGCCCAAGCAGAACCCCAATGGCTCGTGCCCGCTGCCTGCCGCATCCTTACCCCCAGAGTACCCTTGGATGAAGGAgaaaaaagcatccaagaaaaACCAGACAGCGACTTCGACAGCAACAACCACCGCCGACCCCGGTCCGCTATACTTCTCCCCTCAAGGCTCGCCCGAGATTTCTGATGGCGGCAGCGGGGCGACTCGCCGACTCAGAACGGCGTACACCAACACTCAGCTGCTGGAGCTGGAGAAGGAGTTCCACTTCAACAAGTACCTCTGCCGGCCGAGGCGCGTGGAAATCGCCGCTCTGCTGGATCTCACCGAGCGCCAGGTCAAGGTTTGGTTCCAAAACCGGAGGATGAAGCACAAGCGGCAAACGCAGTGTAAAGAGAACCACCACGGCGACGGGAAACCGCCGAGCCTGGAGGAGGCGGGCGGGCGGGGGGACGGCAAATCTTTTTTCGAGCAAGTGGCAAACAATGTATCGGGGGCGCTTTTGGAAAGAGAGGGTTATCCGTTTCAGCAGAATACCTTAACTTCTCAACAGCCACAGAATGGACACAATAGTGATTCCCAAAGCGCGACTGTCTCGCCTTTAGGTAGCAATGACAAACATCTGAAACATTTTCCCAACCCGTCACCCACTGTTCCTATCTGCGCCCCAACAATGGCCCCGGATTGTGCATCTGCTCAGGACAATGGCAGTCCCTCGGCCCTGGACGTCTCTTTACAGGACTTCAACGTTTTCTCCAACGATTCCTGCTTGCACCTCTCAGACGCCGTGTCCCCAAGTTTGTCAGAATCTGTAGACAGCCCCATCGGTTTATCTACGGAGGCCTTTGATTTCTTCTCCGAGACGCTTACAACAATCGACCTGCAACACTTGAGCTACTAACTCTAACTGAAGTTTCATTATAGGGACGTCAATATCTTTCTCACGTTGATGGTCTGTGTGTTTAATTGTGACTTAAAAAAATAGGCCTAGACCATTAATCAATGAGGTAAGTTTTTCAATAATCGagttataatttttgtttacagagAAAATATGGCAGGAAAGAAAGTGATATTTttcacgttttatttttgtatcgtTCGCCGGCAAAGCGCCATATTTTCATAGAATAAATTTGTACTTGCTATTGAAAA
>XM_043261170.1
AAAAGCCAGGCTCGGGATTAATGGGTTTCCTCGATCGTTGGCTGTTGGTGTGTTTAAGTGTCCAGTTGATGTGTTTGGGGGATCTTCAGGCGAGGGCCGGTCGAACAATAAAGGGGGAACAGCAGACGGACTCACTGTCACTCTCACTGTTTCAGACCATTCCAAGCCTGAACCCCGGCAGCCACCCTCGCCACAGCCGGCCCAAGCAGAACCCCAATGGCTCGTGCCCGCTGCCTGCCGCATCCTTACCCCCAGAGTACCCTTGGATGAAGGAgaaaaaagcatccaagaaaaACCAGACAGCGACTTCGACAGCAACAACCACCGCCGACCCCGGTCCGCTATACTTCTCCCCTCAAGGCTCGCCCGAGATTTCTGATGGCGGCAGCGGGGCGACTCGCCGACTCAGAACGGCGTACACCAACACTCAGCTGCTGGAGCTGGAGAAGGAGTTCCACTTCAACAAGTACCTCTGCCGGCCGAGGCGCGTGGAAATCGCCGCTCTGCTGGATCTCACCGAGCGCCAGGTCAAGGTTTGGTTCCAAAACCGGAGGATGAAGCACAAGCGGCAAACGCAGTGTAAAGAGAACCACCACGGCGACGGGAAACCGCCGAGCCTGGAGGAGGCGGGCGGGCGGGGGGACGGCAAATCTTTTTTCGAGCAAGTGGCAAACAATGTATCGGGGGCGCTTTTGGAAAGAGAGGGTTATCCGTTTCAGCAGAATACCTTAACTTCTCAACAGCCACAGAATGGACACAATAGTGATTCCCAAAGCGCGACTGTCTCGCCTTTAGGTAGCAATGACAAACATCTGAAACATTTTCCCAACCCGTCACCCACTGTTCCTATCTGCGCCCCAACAATGGCCCCGGATTGTGCATCTGCTCAGGACAATGGCAGTCCCTCGGCCCTGGACGTCTCTTTACAGGACTTCAACGTTTTCTCCAACGATTCCTGCTTGCACCTCTCAGACGCCGTGTCCCCAAGTTTGTCAGAATCTGTAGACAGCCCCATCGGTTTATCTACGGAGGCCTTTGATTTCTTCTCCGAGACGCTTACAACAATCGACCTGCAACACTTGAGCTACTAACTCTAACTGAAGTTTCATTATAGGGACGTCAATATCTTTCTCACGTTGATGGTCTGTGTGTTTAATTGTGACTTAAAAAAATAGGCCTAGACCATTAATCAATGAGGTAAGTTTTTCAATAATCGagttataatttttgtttacagagAAAATATGGCAGGAAAGAAAGTGATATTTttcacgttttatttttgtatcgtTCGCCGGCAAAGCGCCATATTTTCATAGAATAAATTTGTACTTGCTATTGAAAA
>XM_043261171.1
CGCACACGTTGCTTGCGGCCGAGACTGACAGCAACACGAGCCGAGCGGAGAGGAAGATACCGGACGATGCGCTTTCCAACGGATCACGGGACGAGAAAGCTCCTGCGGAAAACAAGGCGGATATAGACCCAAACCATTCCAAGCCTGAACCCCGGCAGCCACCCTCGCCACAGCCGGCCCAAGCAGAACCCCAATGGCTCGTGCCCGCTGCCTGCCGCATCCTTACCCCCAGAGTACCCTTGGATGAAGGAgaaaaaagcatccaagaaaaACCAGACAGCGACTTCGACAGCAACAACCACCGCCGACCCCGGTCCGCTATACTTCTCCCCTCAAGGCTCGCCCGAGATTTCTGATGGCGGCAGCGGGGCGACTCGCCGACTCAGAACGGCGTACACCAACACTCAGCTGCTGGAGCTGGAGAAGGAGTTCCACTTCAACAAGTACCTCTGCCGGCCGAGGCGCGTGGAAATCGCCGCTCTGCTGGATCTCACCGAGCGCCAGGTCAAGGTTTGGTTCCAAAACCGGAGGATGAAGCACAAGCGGCAAACGCAGTGTAAAGAGAACCACCACGGCGACGGGAAACCGCCGAGCCTGGAGGAGGCGGGCGGGCGGGGGGACGGCAAATCTTTTTTCGAGCAAGTGGCAAACAATGTATCGGGGGCGCTTTTGGAAAGAGAGGGTTATCCGTTTCAGCAGAATACCTTAACTTCTCAACAGCCACAGAATGGACACAATAGTGATTCCCAAAGCGCGACTGTCTCGCCTTTAGGTAGCAATGACAAACATCTGAAACATTTTCCCAACCCGTCACCCACTGTTCCTATCTGCGCCCCAACAATGGCCCCGGATTGTGCATCTGCTCAGGACAATGGCAGTCCCTCGGCCCTGGACGTCTCTTTACAGGACTTCAACGTTTTCTCCAACGATTCCTGCTTGCACCTCTCAGACGCCGTGTCCCCAAGTTTGTCAGAATCTGTAGACAGCCCCATCGGTTTATCTACGGAGGCCTTTGATTTCTTCTCCGAGACGCTTACAACAATCGACCTGCAACACTTGAGCTACTAACTCTAACTGAAGTTTCATTATAGGGACGTCAATATCTTTCTCACGTTGATGGTCTGTGTGTTTAATTGTGACTTAAAAAAATAGGCCTAGACCATTAATCAATGAGGTAAGTTTTTCAATAATCGagttataatttttgtttacagagAAAATATGGCAGGAAAGAAAGTGATATTTttcacgttttatttttgtatcgtTCGCCGGCAAAGCGCCATATTTTCATAGAATAAATTTGTACTTGCTATTGAAAA

Function

symbol description
hoxa2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; hindbrain neural plate; neural crest; and pharyngeal arch. Orthologous to human HOXA2 (homeobox A2).

NR:

description
homeobox protein Hox-A2b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261169.1 True 1689 mRNA 0.49 2 11619513 11621777
XM_043261170.1 False 1345 mRNA 0.51 3 11619513 11621949
XM_043261171.1 False 1322 mRNA 0.52 3 11619513 11630905

Neighbor

gene id symbol gene type direction distance location
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding downstream 5255 11598331 ~ 11614258 (-)
LOC122360822 LOC107596715 coding downstream 118300 11493099 ~ 11501213 (-)
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding downstream 166004 11437373 ~ 11453509 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding downstream 796324 10817891 ~ 10823189 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding downstream 808496 10808337 ~ 10811017 (-)
hoxa10b hoxa10b,LOC107685613,LOC107743223,LOC107550811,LOC107744724,LOC107684558 coding upstream 2585 11633490 ~ 11636603 (-)
hoxa11b hoxa11b,LOC107743198,LOC107596728,LOC107685585,LOC107744726,LOC107684537,LOC107550813 coding upstream 8100 11639005 ~ 11641509 (-)
hoxa13b hoxa13b,LOC107743224,LOC107685614,LOC107596755,LOC107744698,LOC107550814,LOC107684536 coding upstream 15945 11646850 ~ 11648869 (-)
hibadhb hibadhb,hibadh,LOC107685537,LOC107550829,LOC107744697,LOC107743154,LOC107684541,LOC108441516 coding upstream 22308 11653213 ~ 11662232 (-)
jazf1b jazf1,LOC572950,LOC107743157,LOC108441515,LOC107684540,LOC107550831,LOC107685586 coding upstream 56390 11687295 ~ 11704828 (-)
LOC122361126 NA non-coding downstream 49776 11562878 ~ 11569737 (-)
G111516 NA non-coding downstream 75181 11543916 ~ 11544332 (-)
G111508 NA non-coding downstream 130686 11487682 ~ 11488827 (-)
LOC122360676 NA non-coding downstream 138286 11480106 ~ 11481227 (-)
G111453 NA non-coding downstream 352688 11266596 ~ 11266825 (-)
G111559 NA non-coding upstream 32013 11662918 ~ 11666274 (-)
G111623 NA non-coding upstream 143014 11773919 ~ 11774181 (-)
G111625 NA non-coding upstream 149882 11780787 ~ 11781172 (-)
LOC122360397 NA non-coding upstream 152790 11783695 ~ 11784334 (-)
G111639 NA non-coding upstream 187554 11818459 ~ 11819778 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 207736 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 232520 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 333081 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 736089 10857520 ~ 10883424 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 855208 10745576 ~ 10764305 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 234775 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 732880 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 2023155 13654060 ~ 13683909 (-)
G112478 NA other upstream 2603649 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2867358 14498263 ~ 14503136 (-)

Expression


Co-expression Network