skap2 (skap2,LOC107743153,LOC107684555,LOC107685583)


Basic Information

Item Value
gene id skap2
gene name skap2,LOC107743153,LOC107684555,LOC107685583
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11598331 ~ 11614258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261174.1
CTGTCTAATTTGAATAGTGGTTTCTGCAGGGCAGGCTATTGCTTCTTCCGTATTTCACAGTCCACTAGCAACTTCCGTGTTTCGAAGGCTATCTAGCTGGGTCAAGCGGTTCATCACAATGAGGTCCATCCCGGAAGACTTAACGACGCTCATTTCAGatCTGGAAAGTTTTTTAACCGACGTCCTTAAAGGGGAGAACTTGAGCAagaaagcaaaagagaaaaaggacGCCTTTATCAAGCGCATTAAAGATGTGAAAACGAGcTACTCTCAAGAATTCAAGGACAAACGAGACGAGGAGTTGCCAGAGCCTGACGAAGCAGACACCAACGACGGAGGATCGCTGCAGTCAGAGCAGACTGACAGAGATGAGGAAAGCGCTTATGACGGAGTTCAACAGTCTCCTCCGGTGGCAGCTCAGGACCTTCAGTCCATTTTAAAGAGTGGCTATCTGGAGAAGCGCAGAAAGGATCACAGCTTCTTTGGAAATGAATGGCAGAAGAGATGGTGTGCTTTAAGCAACAATATATTCTACTACTACGGCAGTGAGAAAGATAAACAGCAGAAGGGAGAGTTTAATATTGTCGGGTACACAGTCAAAATGAACAACACCCTGCGGAAAGACGCAAAGCGGGATTGTTGCTTTGAGATCTCCGCTCCAGACAAGCGTGTATATCAGTTCTGCGCTGCATCTGAGAAAGATGCAAAAGAGTGGGTGGAGCACATTGACTTTCTGATTAAAGACATGGGTGGAGTCATTCCTGAAGATGAAGAAGAGTATGATGACTGCTTACCTATGAACCAAACAGCCAGCCATCCTGCACCTATTGATGATGACATTTATGAAGAACTCCCAGagGAAGATACACCCCAACCTGTTAAACCAGCAGTGACCCTGGCCAGCAAACCCCCATCACCATCTACCCCTGTGACAGCAGTGAACAAGAGCACAGACTACGCCAACTACTTCCAGGGCTTGTGGGATTGCGCTGGAGAGCATCCCGACGAGCTGTCCTTCAAGCGAGGAGACACCATCTATATCCTCAGCAAGgagtACGATATGTTTGGATGGTGGGTGGGGGAGATGAAAGGGACCATTGGAATCGTGCCTAAAGAGTATCTTCTTGAACTGTATGTGCTGTAAAGGGGTCTGAGACACCTCGGATGGCCTGCTGTTGTAGCTTCATGTTCCACAAATTCCTTTCTCCACTGTTTCCACTGTTCTGTGTgagagtttatatatatatatatatatatatatatatatatatatataaagcaaactGCCAGCTCAAatacaaaaagctttttttgttgttgttaatgatTAAATTATCACGTGCCCACCGAGTGAATGTAagcctttttttgtctttccagACATTTATATGTGGGTCAAATCTGTATGAAATAAAGCCTGTGCGTTCGAAGTCTC

Function

symbol description
skap2 Predicted to enable kinase activity. Predicted to act upstream of or within B cell activation and phosphorylation. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP2 (src kinase associated phosphoprotein 2).

NR:

description
src kinase-associated phosphoprotein 2-like

GO:

id name namespace
GO:0042113 B cell activation biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016301 kinase activity molecular_function

KEGG:

id description
K23471 SKAP2; src kinase-associated phosphoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261174.1 True 1435 mRNA 0.45 13 11598331 11614258

Neighbor

gene id symbol gene type direction distance location
LOC122360822 LOC107596715 coding downstream 97118 11493099 ~ 11501213 (-)
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding downstream 144822 11437373 ~ 11453509 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding downstream 775142 10817891 ~ 10823189 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding downstream 787314 10808337 ~ 10811017 (-)
colec10 LOC107738939,LOC107574455,LOC107677951 coding downstream 1010613 10571751 ~ 10587718 (-)
hoxa2b hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758 coding upstream 5255 11619513 ~ 11630905 (-)
hoxa9b hoxa9b,LOC107743222,LOC107684557,LOC107744723,LOC107685612,LOC107550810,LOC107596757 coding upstream 14841 11629099 ~ 11633344 (-)
hoxa10b hoxa10b,LOC107685613,LOC107743223,LOC107550811,LOC107744724,LOC107684558 coding upstream 19232 11633490 ~ 11636603 (-)
hoxa11b hoxa11b,LOC107743198,LOC107596728,LOC107685585,LOC107744726,LOC107684537,LOC107550813 coding upstream 24747 11639005 ~ 11641509 (-)
hoxa13b hoxa13b,LOC107743224,LOC107685614,LOC107596755,LOC107744698,LOC107550814,LOC107684536 coding upstream 32592 11646850 ~ 11648869 (-)
LOC122361126 NA non-coding downstream 28594 11562878 ~ 11569737 (-)
G111516 NA non-coding downstream 53999 11543916 ~ 11544332 (-)
G111508 NA non-coding downstream 109504 11487682 ~ 11488827 (-)
LOC122360676 NA non-coding downstream 117104 11480106 ~ 11481227 (-)
G111453 NA non-coding downstream 331506 11266596 ~ 11266825 (-)
G111559 NA non-coding upstream 48660 11662918 ~ 11666274 (-)
G111623 NA non-coding upstream 159661 11773919 ~ 11774181 (-)
G111625 NA non-coding upstream 166529 11780787 ~ 11781172 (-)
LOC122360397 NA non-coding upstream 169437 11783695 ~ 11784334 (-)
G111639 NA non-coding upstream 204201 11818459 ~ 11819778 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 186554 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 211338 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 311899 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 714907 10857520 ~ 10883424 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 834026 10745576 ~ 10764305 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 251422 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 749527 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 2039802 13654060 ~ 13683909 (-)
G112478 NA other upstream 2620296 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2884005 14498263 ~ 14503136 (-)

Expression


Co-expression Network