mms22l (mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675)


Basic Information

Item Value
gene id mms22l
gene name mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23389423 ~ 23403630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261198.1
GTCCAATCAAAGAGCGGTTTGGTTGACCGACGCGTCCGTGCGCATGCGCAGTGTTGCTTTGACTGTAGCGCGGGAGTCCGGTGATACACTGGTAGGGAGGTCGTTCATAGACGCGGCAGTTGTCAACAGTGTTGAATGGTCTATTTCATCTTGTTGACATGGAGGGGGAGTTCTCGCAGTCCCTCACCCCACCTGTATCTCCATCTGCTCTGGATCATTATGGCGATTCAGCTCCCAGTCGGCCGCCCTGCTTCACCTGTGCTTATGAACCAGGTAGAGAAGAGACAGGACGACTGTCATCAAATGGCTACAtcagcagaggagccctgaaGAGGTTGCTGTTGAAGCTCGATCCAGCTCCTGCAGATTTTGAGGGGGACACAGTTGATATTTTTGACTTCCCATGGGTGACAGAAACAGCGCTGGTAGAATCGACCAAACTTCTGTTTGGCTTGTTCAGACAAAAGGTGTTAAAACTGGAGACGCTGGTGCAGTCCAGCTCCCACGATTTTGGTCAAGCGAGCAGTCTTCATTATGAGGCAGATGAACTGAGACAGCAATGCGTGTTGTTTCTCAGCTATATCAAGGTCTTCATTTACAGGTTTTTGGAGCCCTCACAATCCCTAGACGAAGGTGCTGTTCATCCCTACAAAGATGCAGAAGCTCAACTGCCCTCAGTCTTGGTGGAGGAGCTCCTCAGTATCACGCTGCTTATTGGACGAATCAGAAATCTTCCAGCCAATGTTCAGAGTGCTCTTACGATTCAGCATCAGGGAAAGCTCTTTCCTCCGTCTTGGCAATTATTACATCTGCATCTGGACATCCACTGGTCTGTTCTGGAGATCCTGCACCTGCTGGAGCAAAAGATGATGGGTCAGGTAGTTTATGCACACCAGTTCGTGAATCTAACAGGTGAGACCCTCACAAACATCAGTCTGTTTGAGGACCAGGTCAACAACCTGCTCTGTGATCTCATTGGCCTGGCCATGAACAAATATAATaagGTGAGACCAACAGAGACTTTGAACAGCCATCACTATCACTGCCTCTGCACAAAGGAATTATGGATTCTACTCATACGTTTGCTGGAGCACAGGAGCAAAACCATTCACACTCAGTCTTTTTGGAGTTATGTAAATGCCCTGCTGCAGACTGTCCTGAAGGAAATGCCTTCAGGAGACCGTGACCCAGGTCTCCCCATGCACTTTAAAGACCCTGATGGCTTCACCTGGTGGCTTCTCACACACCTGGCCCAGATTGGGATGTACAACCGGAATGGCACTGCTCAACAGGAGAAACAACTTGAGGATAATTGGAGCTTTGTGATGGGGCTGCTGAAGTCTAGCTGTGATCCAAAGaaagcTGCACAGGAAGAACAGATACGAATGATTGTCCACTGCTGCCTCAGCCTCAGCTTGATGTGGGGCCCAAATGTCAGTGTTGTCACAACACTCTGGGAGTATTACAGCAAAAATCTAAACAATTCTTTCACCGTGCCCTGGTTAGGCGTGTCAGGGCTGGGCAGTATCAGCAGGACTCCCCTCTGTCTGTTGCAGCAGGCTAAGAGCTGCTGTAACCCTGCATCCGTTGGCTCcaactctcacacacagctctaccGCTCAACCAACTCCTTCCATATCTTCCTGCGTATTCTGGCCCTTCACCTGAGCCAGGAACATGCTGGCGGCGCCCCCTGGAGACAGATCAAGGGCAGacTCTACTCAAAGTTCCACCAGAGGCGGATGATGGAGCTCTCTGACACGGGCCTGCTGCACTTCCTGCTGCTTTTCCTGGTCCTGGCACAGTGTGCAGAGCTGGAGGACGTGGCCAGCCGAGCGTGCGACTTACTCGCCATGCTGCCCGCTGACTCCACGCCCCCGGCCCTGCGTGCGCTGCAGTGGAGGGGCCAGCTGGCTCTCGTGCTGCTGTATTTGGAGAAGGGACTGGATGCTGGCGCTCTGGCGGAGCAGTTGGCCGCCTACTTCAGCCAAGCGGCCCGCGAGTTCTACCTGAAGACCACCGAGCCTTCGCGCAAGCTAGCTCTCTGGGCACCACTTAGCTCATACCTGGAGGGGGTGAGCGAGGTGTTCGAGACGAGTCCTAATCTTACTCTGTCAGAGGAGAGGCTTCTGAAGGAGGGTTTCGGACTGCTGCTGCCTGCCTGCCGTCAGTCCGAGCTCAGCTCCGCTTTGGGCTTCCTACAGACGGTCCTGGCGCAATTGCGGAGAGTTCACCAGCGCTGTGGCCAGCCGTCTCACTCTGTAGATTCTCCCAGTTGGGTTCCTCTCCCCAGCGTGGCTAAAGAGCGCCACCAAGCGGTGGCAGCTGCGCTCTGGTCCCACTTCTTCCCCTTCCTGTGCAGCATGAGGCTTTCCCAGACCCCCCCGCCCCAGCTCGCAGACGCCGCAGCAGGCTTTACACTGTTGGCATTAGACATGCCTGGCTCTGCCCCTCAAAACCTACAGCCCCACCCCATCCAGTCCATTATGCAAAGCTTCGGCTGGGATGAAATGCTTCACCCCCTGCTGGTAACCCACTATCTAAATCACCTGCTGCAAAATGGAGAGTTGGTCAGTTGGGTCAGCTCTGGGCCAGGTTCAGGTTCGGCCCAGGCTTTATGTGTGCGTGCCTGGATCCGCTGTGTTCTTCAACAGTACCTCCATAAAAGCCAAGATGCTCCAGATACAAGAGCAGGAAGAAATCTGGATGAACAGCTGGCCGAGTTAACCAGACAGGTTCTCCGACTTCCAGAAGTGGAGTCTGTGCTGCAGAGAGCAGGCCTACATCCTGCTGCTGCCAAAGATCCCAAACCTGCAATGGCTGTGTTCATCAAGGCTGTGGGGCGATCATACGGTGAGCTCCAGCTCCTCTCTGAGCGTTCTTCAGCGGTGTCCCGAGCACTGGAGTATGTAGGAGACATCCTCAAATATATCAAGCCTTACCTGCTAAACAAGAGCCGGGAGGGTCTACAGCTGGCATACTGGACTGTAGGCTGCCTGATCAAGCACTGGAGCCACCTGTTCGCCACCTCTAAAGCTCAGCAACTGCTCTTCCGTATCGTAGATGTGCTCTTACTGCCCCACGCTCTCCTCCAACAGGACAGTGGAGCACACACTCAAATGCTGTCAGCCCTAAAAGAAAGCCTGCCTCTGTTCCTGCAGGGTTTGTCAATGGCGGTGAATGTGTCACAATCTCAGGGGGCGTACCTGAAGCAGCAGCTGCACAGTGTCATTTCCCAGTACTTGAGCCGATTTCTCCCATCCACACCCTCTACTGGAGCGGTGGTCAATCATCCTGTCCTGCTTGCAGCCTGCGAATCAACACCCACCCCGCAGGGGGAAAGACTCAGAAGGAGCATACTGCATGTGCTGAGAGAGAACTTCCTCCAGTTTAAAGGTCTCGCTCCTCCTCCCCGACTTGCTGCTGTTCTCTCTTTACTGTTGGAGCTTCTGAAAAGGAACAGGGACAGAGATCCTGCCTTACTCACAGTTCCACTTCCTTTGGTGCTGCGCTGTCTGATGCTGGTCAATGAGCCACAAGTAAAGAGGCTGAGCACAGAGGTTACACAGCTCATTGTGGAGCGGTGCACTGCTGCAGTAGGAGAGCAGCCATGTGAACACACCACTACTATTCTACGGGCCTTTGTGGAAGAGAATGAAGGAGTGTATGACCAGCAAGTGTATAATGTTCTAGAAGTTGTTGCTGTCCTTCACCCCTTCACAGTGACGGCTCTTATTCCCTTTCTGTCACTGAACCTTAGAAAGACAGAGTGCAAGAGAGGTCTGGGAAAAAATACCTCACTCAGGAATGGCTATAGGAGGCTTCTGACCCTGCTTGGAGACAGTGGACAGGCTGAGATGGTTAGTTTAGAAGAAGACTGACTTCCATCAACTCCCAATACTCTTCTGTAAACAGTGTACATTGTGTAGACTTGATAGTGGGTCCATGTGTGGATATTGCGAATAAAATTTGTTTGAATACCCTG

Function

symbol description
mms22l Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

NR:

description
protein MMS22-like isoform X1

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261198.1 True 3985 mRNA 0.53 25 23389423 23403630

Neighbor

gene id symbol gene type direction distance location
calhm6 fam26f,LOC107700692,LOC107552824,LOC107716816 coding downstream 20470 23367501 ~ 23368953 (-)
calhm5.1 LOC107704861,LOC107716815,LOC107587898,LOC107711741,LOC107552825 coding downstream 22050 23362337 ~ 23367373 (-)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695,LOC107552826 coding downstream 28049 23358473 ~ 23361374 (-)
kpna5 kpna5,LOC107704934,LOC107716841,LOC107552832,LOC107711738 coding downstream 41409 23339451 ~ 23348014 (-)
cnot3a cnot3a,LOC107711735,LOC107587779,LOC107700763,LOC107552836,LOC107704926 coding downstream 74662 23306694 ~ 23314761 (-)
fbxl4 fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759 coding upstream 123458 23527088 ~ 23536822 (-)
faxcb faxcb,LOC107587769,LOC107700756,LOC107711729,LOC107704942,LOC107716849,LOC107552822 coding upstream 153145 23556775 ~ 23566844 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding upstream 163428 23567058 ~ 23572317 (-)
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding upstream 169341 23572971 ~ 23579881 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding upstream 273360 23676990 ~ 23736637 (-)
G115669 NA non-coding downstream 61530 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 199773 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 221483 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 311553 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 315973 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 412267 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 413270 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 416889 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 641130 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 674001 24077631 ~ 24077867 (-)
G115554 NA other downstream 455456 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 488236 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1300331 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1420888 21964855 ~ 21968535 (-)
G115149 NA other downstream 1585619 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 116178 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 179363 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 264435 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 913852 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 961010 24364640 ~ 24369566 (-)

Expression


Co-expression Network