rbfa (LOC107699468,LOC107715083,LOC107596252)


Basic Information

Item Value
gene id rbfa
gene name LOC107699468,LOC107715083,LOC107596252
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15998312 ~ 16000648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261263.1
CTTCGCCCTCAGACAAATGCAGTCGATGCTGAAACTAGCGTGAGTGTAAAGATATATTAAGCTGGTGATCATGCTGGCTGTCAGAAGAGTTGTTTGCTCCAAAGACTGCACAATTAGTCGATATACGACGGCATTAACCAGTGTGATCCATAAAATGACAGTCCGGCCGGAGAGACAGAGTTTGTCCTTGGGTGGTATGTTGAAAGAAAGTAACGTTGGTATTCATAGCTCAGCCTGTCTGTCTGGAGGCAATAAACTGATGAAGATGTTGAACAAAAAGAAGAAGAAACAATGGTATGACTCTCCTCCGCAGGCCTCAGCGGTCAGTCAACTCAGCTTTCTGAAACCATCAAAGCGAAGTAAAGAGGACAGTGTTCGTGTGAGGACTCTCAATATCATCATCTACAAAGCAGTGGTGGACTTGCTGAGCTCCTATGAGCTCAACTCAGAGATCAGTTCCCACAGTGTGCAGATCTCCAAAGTTTCACTGTCACCAGATTTCTCTGCTTGCCGAATATACTGGAAGACGAGTCAGTCAGCTCAACAAGACAGCCATATTCAGCaggctttaaataaatgtgctcCTCGCATACGGCACCTTCTGATCTCTCACCAAATCCTTGGCAATGTTCCGCCTGTGGTTTTAATCAGAGACAAACAATATGCTGCTGTCACTGAAATCGACAACCTTCTCAAGAAGGCAGATTTTGGTCTAGATGAAGATAACATAAATCATTTATCTACCAACAATGTCGGGGCCAGACTGCAGCTGATGGAAtctgaagacatgaaaagaCCTGTTTTGTTCGGTGTGGATCACGATGCTCTGCACAAACAGATCGAAGCCTATAAACGAGAGAAGGGGGCAAGAGACACTCTCACGCAGAGTCCTGCCGCTGGAGGACTAACACAAGAGCAGCTGGATGTGCTAGCAGATATAAGGAAGAAAAAACTCatagagaaaaagaagaaaaagtctAAATGGCTGAAGGATAATGATATCACTCCTAAGGACTTTCTGTTGTCCAGAAGCCTTCAAAAAGAGGACAAAGAGGAGAAGGATGGTGATGAGGACAGCCAGGTCACAGAGTTGATGGAAGAGGACAACAGCAGACACTGAAATCACATCTTTTGGTTACTTGTTGTATAGAAgtggttaataaaaatattcaagcttAGGCGAAAAAGTAAA

Function

NR:

description
putative ribosome-binding factor A, mitochondrial

GO:

id name namespace
GO:0006364 rRNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261263.1 True 1192 mRNA 0.44 7 15998312 16000648

Neighbor

gene id symbol gene type direction distance location
prelid3a prelid3a,LOC107715058,LOC107723525 coding downstream 34604 15959669 ~ 15963708 (-)
lratd2b zgc:110182,LOC107715046,LOC107699471,LOC107723393,LOC107593723,LOC107595500,LOC107657619 coding downstream 59422 15936647 ~ 15938890 (-)
prss1 try,LOC107714673,LOC107699515,LOC107595397,LOC107657672,LOC107723506,LOC107593633 coding downstream 129101 15867304 ~ 15869211 (-)
has1 has1,LOC107714739,LOC107723422,LOC107657615,LOC107699477 coding downstream 193610 15799086 ~ 15804702 (-)
si:dkey-79d12.5 si:dkey-79d12.5,LOC107714671,LOC107595341,LOC107699478,LOC107657668,LOC107723514,LOC107570843 coding downstream 238645 15754181 ~ 15759667 (-)
LOC122360718 jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487 coding upstream 69891 16070539 ~ 16103655 (-)
LOC122361095 LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647 coding upstream 148315 16148963 ~ 16152079 (-)
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding upstream 151856 16152504 ~ 16154388 (-)
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding upstream 197071 16197719 ~ 16210633 (-)
zgc:110410 zgc:110410,LOC107723576,LOC107657623,LOC107593651 coding upstream 239306 16239954 ~ 16243472 (-)
LOC122360541 NA non-coding downstream 12128 15984741 ~ 15986184 (-)
G113244 LOC107715075,LOC107699469,LOC107595516,LOC107723556,LOC107593640,LOC107657683 non-coding downstream 31119 15964758 ~ 15967193 (-)
G113234 NA non-coding downstream 39648 15929222 ~ 15958664 (-)
G113236 klhl38b,LOC107723565,LOC107657680,LOC107593636 non-coding downstream 51629 15911312 ~ 15946683 (-)
G113231 LOC107714685,LOC107699511,LOC107657677,LOC107723481 non-coding downstream 89639 15907099 ~ 15908673 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding upstream 65518 16066166 ~ 16067545 (-)
G113281 NA non-coding upstream 119678 16120326 ~ 16196677 (-)
G113300 NA non-coding upstream 190214 16190862 ~ 16192689 (-)
G113280 jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576 non-coding upstream 193381 16194029 ~ 16195896 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding upstream 351622 16352270 ~ 16357623 (-)
G113220 LOC107714743,LOC107699517,LOC107595378,LOC107657670,LOC107593630,LOC107723558 other downstream 136419 15857599 ~ 15861893 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other downstream 179226 15816979 ~ 15819086 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other downstream 326161 15659752 ~ 15672151 (-)
rps19 rps19,LOC107657656,LOC103354132,LOC100689943 other downstream 501899 15468480 ~ 15496413 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other downstream 623008 15365188 ~ 15375304 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other upstream 665 16001313 ~ 16006471 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other upstream 12316 16012964 ~ 16013751 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other upstream 138671 16139319 ~ 16141235 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other upstream 218013 16218661 ~ 16228466 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other upstream 232324 16232972 ~ 16239506 (-)

Expression


Co-expression Network