nop2 (nop2,LOC107685519,LOC107699935,LOC107749104,LOC104957145)


Basic Information

Item Value
gene id nop2
gene name nop2,LOC107685519,LOC107699935,LOC107749104,LOC104957145
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8643158 ~ 8649731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261279.1
AAAACCAACGTGTGCTGAAGTCACATGTGCGCTAGTTCATAGCAGCATGAGAGACACATGTATTCAAGCAACTTGCGTAAATTAGGGCTAATATTTCTCTGAGCGTCATAGAGAAGATCGAATAAGAGCAAGAGAGTGTTTTTGTTGAACAAGTAGTTTTTTTAGGTGTCAAGCATGGGCAGGAAGTTGGACGCCACTGTCAAGGTGAAGAGAGGACCTGGACGTAAGGCCAGGAAACAGAAGGGAGCAGAAACTGAGCTGGCCAAGTTTGTGGTTGATGAGGATGCACCAAAAAAACTTTCAAGCAGAGCGAGAAAACGAGCTGCAAAAAGAGCCCAAGCGACCAAAGAACCCAAACAAGAGGAAAAGCCTAAGAAAGGTTTCTCGGATGAGAATAGTAAATGGTTAAAACCAGCACAGAGGAAGCGAAAGATTGACCAAtctgaagaggaggaggacagTGACAGCCAATGGgaagaagatgaggatgaggatggtgAAGAGGGCTTTGATAACAAGGAAGTAAAGGAGGTGGAGGAAGAGGACGATGACGATGAAGATATGGTTGATGACTATGGTGCTGATGATGGGGATGATCAAGACAGCGATGGAGAAGAGCTTCTGCCAATTGAGAAAGCtgcaagaaaacagaaaaaacaaacaagcatgaAACCAGAGATTGATGGCGAcgatgaggatgaagaagaggaggaggaggaggaagatgatgatgatgacgacgatgaggaggaggaggaagataaggaagatgaagatgaagaggatgCTGTACAGGCAAATATCGACGAAACTGAAAAATTCAAACTCCCAGGCGCAGCAGATAGAGCGAAGGAGGGCCTTTTACCGATGGACCTGCAGACCATCCATCAGAGGATCAAAGATAACGTGGATGTGCTGTCTCACTTCGCTGAGAAGAAAGAAGAGGGCAAGGAGAGATCGGAGTATCTCTCTCTGCTGCGCTCTGACCTCTGCACCTACTACAGCTACAACGAGTTCCTCGTCAGCAAACTCATGGATCTTTTCCCTCTCTCcgagCTGATTGATTTTCTTGAAGCAAATGAAATTCAGAGGCCAGTCACCATAAGAACCAACACCCTGAAAGCCAGGAGGAGAGACTTGGCTCAGGCTCTGATTAACAGAGGAGTGAACCTGGATCCTTTGGGGAAATGGTCCAAAGTGGGTCTGGTTATCTATGACTCTTCAGTTCCCATAGGAGCAACTCCTGAATATCTGGCAGGACAGTACATGCTGCAAGGGGCATCGTCGTTTCTGCCTGTAATGGCGCTTGCGCCCCAGGAGGGGGAGTCAGTACTAGACATGAGCGCAGCTCCAGGAGGCAAGACCACGTATATGGCTCAGCTAATGAGGAACACGGGCATGATTGTGGCTAATGACGCAAATGCAGACAGACTGAAGAGCGTGGTGGGAAACATCCATCGTCTCGGTGTCACTAACGCTGTCATCTGCAACTATGACGGCAGACAGTTCCCCAAGgTAATGGGAGGTTTCGATAGAGTGCTTTTAGATGCTCCTTGCTCGGGTACAGGAGTTATCTCTAAAGATCCAGGAGTAAAAACAAGCAAGGATGAGGCTGATATTCTTCGCTCCGCACACCTGCAGAAGGAGCTCATCGTGTCTGCTATTGACTCTGTCAATGCCGATTCTCCAACTGGCGGATACGTCGTTTACTGCACATGCTCTATTATGGTAGAGGAGAATGAGTGGGTGGTGGACTACGCTTTAAAGAAGAGAAATGTAAAGCTGGTCCCCACTGGACTAGACTTTGGCAATGAAGGCTTCACCAGATTCAAAGAAAGACGTTTTCATCCCTCCCTCAAACTCTCTCGCCGATTCTACCCTCACTCCCACAATATGGATGGATTTTTTGTGGCCAAGCTAAAGAAGCTTTCCAACACCATCCCCACCACCCCAAAAGAAACCGAAGATGAAGTAGAATCTACAAAAGCAGAGACCGCAGCCTCGTCGGGGCAGATCCAGAAAGCAGAATCTAAGCAACAGAAGCCCTCTTCAACTCCAGAGAAAAGCATCATGGGCAAAAAGCAGAAATTAAAACAGAAGAAGCCTGAGCCGCCCATCAGTACAAAGAAAGCTGTACtgaaatctgagaaaaaaagagctGATGGTCCCAAAAATGCCAAAATTGCCAAGTTGGATGGTGAAGCATCCAAAAAGAGTCAGAAGCCTGACAAAAAGCAGAACGCAAGGGAACTGAATGGAAATTCAACAAAAGGgaaggagaagaaagagaaaagccagttggagaagaaaaataaaatgaaaaagaagaaattgttaaagaataataaaaatagaatggGGAAAAACAAGTTTAGGAAGTTAAAAAAAGTGCTTGGATGAAAAGAAAGTGGACAGTGAAATTCAGTCACTTGACGCAATGAATTGACATGGACCTGTACGCTCAGGACTGGAATCTGATGTTGGTTTGACACGAAAGGAAGCTGCTCTCAACAGGCTGTTAGGGCcataaaaatgatcttttagAAATGTACACAATGATTTTGTGTATTCATCTGGCTTCCCAATAGTTTTTTCTACCTTGTTATCGCTTCACTGAGGATTACTTCAACCTTGTGGTATAAtcttatatatgtaaatatcacTGTCcatttttatggattttgttttgaaaaagaaacatttaactGAATTACTGCAAAGGAGTATGTGGTCTGTTTTTCTGTCACCTATTAAAGAAAGTTTGGAAAAAAGTG

Function

symbol description
nop2 Predicted to enable rRNA (cytosine-C5-)-methyltransferase activity. Predicted to be involved in maturation of LSU-rRNA and rRNA base methylation. Predicted to act upstream of or within RNA processing; methylation; and ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; mesoderm; nervous system; neural tube; and pectoral fin. Orthologous to human NOP2 (NOP2 nucleolar protein).

NR:

description
probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261279.1 True 2774 mRNA 0.45 16 8643158 8649731

Neighbor

gene id symbol gene type direction distance location
gapdh gapdh,LOC107596669 coding downstream 12980 8625617 ~ 8630178 (-)
opn9 LOC107685604,LOC107699923,LOC107596762,LOC107550785,LOC107744717 coding downstream 17639 8617631 ~ 8625519 (-)
iffo1b iffo1b,LOC107685521,LOC107596667,LOC107748876,LOC107550819,LOC107744683,LOC107699931 coding downstream 25917 8600708 ~ 8617241 (-)
si:dkey-260g12.1 NA coding downstream 43029 8592235 ~ 8600129 (-)
tnfrsf1a LOC107685522,LOC107748890,LOC107596732 coding downstream 62889 8574027 ~ 8580269 (-)
emg1 emg1,LOC107748869,LOC107748863,LOC107699927,LOC107744679 coding upstream 2225 8651956 ~ 8653563 (-)
kel LOC107569991,LOC107744677,LOC107699936 coding upstream 4102 8653833 ~ 8664175 (-)
zyx zyx,LOC107748852,LOC107569995,LOC107699937,LOC107596670 coding upstream 14835 8664566 ~ 8680965 (-)
clcn1b clcn1b,clcn1,LOC107744675,LOC107596673,LOC107699941,LOC107569998,LOC107748802,LOC107685513 coding upstream 81966 8731697 ~ 8758899 (-)
casp2 casp2,LOC107748817,LOC107744674 coding upstream 109396 8759127 ~ 8767209 (-)
G110773 NA non-coding downstream 52524 8589898 ~ 8590634 (-)
G110753 NA non-coding downstream 91606 8547782 ~ 8551552 (-)
G110548 NA non-coding downstream 403982 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 407365 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 650291 7988950 ~ 7992867 (-)
G110807 NA non-coding upstream 195794 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 351056 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 354807 9004538 ~ 9005206 (-)
G110849 NA non-coding upstream 357566 9007297 ~ 9007532 (-)
G110852 NA non-coding upstream 381404 9031135 ~ 9031449 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 6936 8633350 ~ 8636222 (-)
G110556 NA other downstream 326473 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 340913 8298789 ~ 8302245 (-)
G110544 NA other downstream 426563 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 550703 8082900 ~ 8092455 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 496199 9145930 ~ 9152183 (-)
G110974 NA other upstream 621240 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 1227480 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 2095845 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 2207789 10857520 ~ 10883424 (-)

Expression


Co-expression Network