emg1 (emg1,LOC107748869,LOC107748863,LOC107699927,LOC107744679)


Basic Information

Item Value
gene id emg1
gene name emg1,LOC107748869,LOC107748863,LOC107699927,LOC107744679
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8651956 ~ 8653563 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261281.1
TGACGTACATTTGACGCGTCGTAGTTCTGTGTCAACATGGCTGCACGCGCTGGAGATAAGCGTGGTCTGGAGCATTTAGATGAATATGACCCCAAACCggcaaaacagaacaaaagttTGCACGAACAGATGACGGAAAAGCGTCTCGTCGTTGTTTTAGAAGGAGCGACGCTTGAAACCGTGAAGGTTGGAAAGACATTTGAGTTGCTGAACTGTGATCAACATAAGAGCATGATCATAAAAAGCGGAAGAGACCCTGGAAAGATTCGCCCTGATATCACACACCAGTGCCTGTTGATGTTACTGGACAGTCCTTTAAACAGAGCTGGACTGCTGCAAGTGTACATTCACACAGAGAAGAATGTTTTGATCGAGATCAACCCGCAGACAAGAATTCCTCGCACTTTTGCGCGATTTTGCGGACTAATGGTCCAGCTGCTGCACAAGCTGAGTGTGAGAGCGGCAGATGGTCCTCAGCGTTTGTTGAGGCTGATTAAAAACCCGGTGTCGGACCACCTTCCGCCTGGATGCCCCCGATATTCAACATCCTTCAAAGCAGGAGACGCTGTTTGTCCCAGAACGGTTGTCCCTAAAGACGGCCCTGCCGCTGTCGTCGTTGGAGCATTCGCACACGGAGCAGTGAACGTGGACTACACAGAAAAGACGGTGTCCGTCAGTAACTATCCTCTGTCTGCAGCTCTGACCTGTGCCAAGATGTGTTCAGCTTTTGAAGAGGTTTGGGGAGTGTTATGACAGAACCAAACTGGTATGAACTGTCAGGAACAGACCTTTTGGActgtattgtgtttgtgtgtacagtCCATtccttggagaaaaaaaatagtgtaataTGGCGGCACAGCAGCGGACAATATTTCATGTATTGTAACACAATTTAACTCGCATTGACGCAAACCATTATACCCTTAAAGTGTGGGGTATTAGACTTCGCTTTCATTTTGTataagtatatacatttattaataaacgcAGAGATCTGCATTTCTGAAAGAA

Function

symbol description
emg1 Predicted to enable rRNA (pseudouridine) methyltransferase activity and rRNA binding activity. Predicted to be involved in rRNA base methylation. Predicted to act upstream of or within ribosome biogenesis. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Bowen-Conradi syndrome. Orthologous to human EMG1 (EMG1 N1-specific pseudouridine methyltransferase).

NR:

description
ribosomal RNA small subunit methyltransferase NEP1

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K14568 EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261281.1 True 1014 mRNA 0.46 5 8651956 8653563

Neighbor

gene id symbol gene type direction distance location
nop2 nop2,LOC107685519,LOC107699935,LOC107749104,LOC104957145 coding downstream 2225 8643158 ~ 8649731 (-)
LOC122361375 NA coding downstream 4401 8647414 ~ 8647555 (-)
gapdh gapdh,LOC107596669 coding downstream 21778 8625617 ~ 8630178 (-)
opn9 LOC107685604,LOC107699923,LOC107596762,LOC107550785,LOC107744717 coding downstream 26437 8617631 ~ 8625519 (-)
iffo1b iffo1b,LOC107685521,LOC107596667,LOC107748876,LOC107550819,LOC107744683,LOC107699931 coding downstream 34715 8600708 ~ 8617241 (-)
kel LOC107569991,LOC107744677,LOC107699936 coding upstream 270 8653833 ~ 8664175 (-)
zyx zyx,LOC107748852,LOC107569995,LOC107699937,LOC107596670 coding upstream 11003 8664566 ~ 8680965 (-)
clcn1b clcn1b,clcn1,LOC107744675,LOC107596673,LOC107699941,LOC107569998,LOC107748802,LOC107685513 coding upstream 78134 8731697 ~ 8758899 (-)
casp2 casp2,LOC107748817,LOC107744674 coding upstream 105564 8759127 ~ 8767209 (-)
m6pr LOC107685512,LOC107748841,LOC107596675,LOC107744715,LOC107699943 coding upstream 121032 8774595 ~ 8780023 (-)
G110773 NA non-coding downstream 61322 8589898 ~ 8590634 (-)
G110753 NA non-coding downstream 100404 8547782 ~ 8551552 (-)
G110548 NA non-coding downstream 412780 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 416163 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 659089 7988950 ~ 7992867 (-)
G110807 NA non-coding upstream 191962 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 347224 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 350975 9004538 ~ 9005206 (-)
G110849 NA non-coding upstream 353734 9007297 ~ 9007532 (-)
G110852 NA non-coding upstream 377572 9031135 ~ 9031449 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 15734 8633350 ~ 8636222 (-)
G110556 NA other downstream 335271 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 349711 8298789 ~ 8302245 (-)
G110544 NA other downstream 435361 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 559501 8082900 ~ 8092455 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 492367 9145930 ~ 9152183 (-)
G110974 NA other upstream 617408 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 1223648 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 2092013 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 2203957 10857520 ~ 10883424 (-)

Expression


Co-expression Network