med18 (med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175)


Basic Information

Item Value
gene id med18
gene name med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1718035 ~ 1720115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261290.1
GCTAAACGATTGGGGAAAAAATGTCGCGCATGCGTTGTATCAACACTGCGTGTGCGCTTTTTTTGCATATGGAGGCAGTCGAGTCTTTTGTTGTGTATGTTTATCTACGGTTTATTTAAAGTTCCGGTTTATCCAGTTATCGATTCCCACTGGTTCGTGactgttaaatgtattaaaagtctTGAAGCGTCGAGAAGAGTTACAGAGCGATGGAGGCTCCGCCGGTCACTGTGATGCCCGTAACGGGTGGAACCATAAATATGATGGAGTATCTTCTGCAAGGCAGCGTACTGGACCAGTCTCTGGAGAGTCTCCTGCATCGTCTCAGAGGTCTGTGTGATAACATGGAACCCGAGAGCTTTGCTGATCATGAGCTGGTGTACCTCCTGAAGGGTCAGCAGGGCAACCCGTTCATGCTGCGCGCGCGCCGCTCGCTTCTTCACCCTACGGCCCCTTGGCACCTGCGCTATCTAGGTCAGCCGGAGGTGGGCGACAAAAGCCGCCATGCCCTGGTGCGGAACTGTGTGGACGTGGCCGCCTCGCACAGCTTGCCAGAGTTTCTCAACGAAATGGGTTTCCGCATGGACCACGAGTTTGTGGCCAAGGGTCAAGTGTTCCGGAAGGGTGCGATGAAGGTGGTTGTGAGCAAACTGTTACGCGTCCTGGCGACGGGAAACACGGAGAACACGGAGCCGCTGTCTCTGTCGTACCTCGTTGAGCTGAGCGTGCTGGCTCCTGCGGGACAGGACACTGTGTCTGAGGACATGAGGAGCTTCGCGGAACAGCTCAAACCTCTGGTGCACCTGGAGAAAATTGACCCTAAAAGACTTATGTAGTGTGATTTCATTGAAAGACTTGATTGTATGATGGGTATTTTTTGCTAATTGATTGATGAAGCACTGTATTTTTAGTAACTAAGTAAAAGTcttaaataactgaaaacaaaaaaacaaataaacctcTCATTTGAGTAATTTCCTCCTTTTTTACCACTTGATgaattcagttatttaaaaaaatctatgcttttTGAGACATAGACATAGTTATTCTgtgtattgttgttttttgacttctgtatcatttttattttgcaaaaaattgTTGCTTTTGACTTCAAAAACGTgcattaaaatagcaataaaccGTGTTTAAATAGCA

Function

symbol description
med18 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II and termination of RNA polymerase II transcription. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED18 (mediator complex subunit 18).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 18

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15135 MED18; mediator of RNA polymerase II transcription subunit 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261290.1 True 1161 mRNA 0.46 3 1718035 1720115

Neighbor

gene id symbol gene type direction distance location
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding downstream 13314 1684904 ~ 1704721 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding downstream 55408 1656548 ~ 1662627 (-)
si:ch73-341k19.1 LOC107551746 coding downstream 63508 1648367 ~ 1654527 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding downstream 168104 1545287 ~ 1549931 (-)
LOC122359849 mbp,LOC107661001,LOC107551742,LOC107697274 coding downstream 207601 1496586 ~ 1510434 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding upstream 280666 2000781 ~ 2010666 (-)
LOC122360106 NA coding upstream 980206 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 1179198 2899313 ~ 2915431 (-)
ascc3 ascc3 coding upstream 1195540 2915655 ~ 3064578 (-)
hace1 hace1,LOC107679309,LOC107661011,LOC107598938 coding upstream 1964003 3684118 ~ 3699070 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding downstream 71886 1645614 ~ 1646149 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding downstream 73862 1643873 ~ 1644173 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding downstream 74992 1642630 ~ 1643043 (-)
G109440 NA non-coding downstream 76723 1640777 ~ 1641312 (-)
G109439 NA non-coding downstream 81038 1636416 ~ 1636997 (-)
G109460 NA non-coding upstream 16073 1736188 ~ 1997307 (-)
G109465 NA non-coding upstream 97147 1817262 ~ 2078943 (-)
G109466 NA non-coding upstream 107047 1827162 ~ 2085673 (-)
G109471 NA non-coding upstream 220014 1940129 ~ 1941153 (-)
G109481 NA non-coding upstream 499451 2219566 ~ 2225804 (-)
G109287 NA other downstream 835283 882459 ~ 882752 (-)
G109275 NA other downstream 1085138 632465 ~ 632897 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other upstream 21005 1741120 ~ 1964161 (-)
G109600 NA other upstream 1393727 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2374642 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3512096 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 4062552 5782667 ~ 5790534 (-)

Expression


Co-expression Network