limd1a (LOC107703922,LOC107744601,LOC107598949,LOC106579350,LOC107732724,LOC107688969,LOC107756905,LOC106605519,LOC107562399)


Basic Information

Item Value
gene id limd1a
gene name LOC107703922,LOC107744601,LOC107598949,LOC106579350,LOC107732724,LOC107688969,LOC107756905,LOC106605519,LOC107562399
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4905857 ~ 4929011 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261292.1
CGTGGAGGTCATGCTGTGCTTTCAGACAACAGTGGGATTCCTGCTGGGTCTCATCAAACACTCGTTGACCGCCGCTGACTCACTGTCCTGTATGGGGTCTTCAGCTTTTAACATCTAGACCACGTAcacacactgaagactgcacCGTGTCAAACACCGTCAAGATAATGATTTCAGTGGGGGTGCTGCATCACAAGTAATCTGGGAAAACGGTCTACTTTGAAATCATTTTCTCTCGGAAATTGCTAGTAGATGATaaattgaattacattttacgcttttaaagagaaagacctatttgcatgattttcagtaaaatatttaatttaagggCGAGGTAGAAAActatgtaaaatatgaaaaattgtTGATACGACAACGTATTAACCTATAAGAATTACTTTCAGCGTACTCATTTAAACTTATACTACACCATTATATGCATCAAAGTTTATggtttttataataaagaaGCAAGTACAGTTGTGGGCTTTCTGGAATAGGCCTATGCTGcgataaaaagtcaaatattgTTGGATCTTCTAAATGAATAAAGGCTAAAATGAGATCataaatagtgtttttaaagCCATTTCAAAAGTCGATAACTGCAGTTGCGTCAGGTTTCTTTTCTGCGTCTgcttttttttgagaaaaaaaaaaaggtacggACTCGTGGATTGGTTGTTATTTGGATGCCGAGTAACTAAATGttaatagaatttaaaattaatatgtggtcactgtaaaaatggttttctctacataaaattaaataaatattagtgcaCGTTACGAAAGAAAACGCCACTTAAAAAATGCTACTTAAATGTTACTTGAGGCGTTTATGCAATTTCTGAGAGAAAATAGTTGTTAAATACGTACGTTCAAAATAATCTGTTGCAATAAAATGGAAACGTGCGTTTATAATTTTGAGTTAATGAGCCTGAAATCTGAAAACCTATTTCCGTTCTGTCAGGACGCGTCACGTGAAACCGTAGAACAATTATCTGAAGGTAACGAAACACATCTCTCTTTCAGACGGCTTTAGGAATGCCCATCATTCCCTCTGGAAATGAGAACGGAGAGACTTGAGTCATCACGTTTCAACACCGGAGTCATTTGGCCCCATTTCCTCGGTCTGCAGCCCGTCCCAATGACGCGCCGCACGCTGACGCCGCGCTCCAGTTAGCGCCTGCTTTATGTGCTGAGCGTCTGACCTCCTCTCAATGCATCGGAGAATACGTTTCTCAGCGCTCGAGCGAACGATAAGTTGGGAACCGGCATAAAGGAAGGCTTTCACGTCGAATGAAGTGTTATGCCTTTAGGGTGCTGACGTCCTGGGACAGTGGCTGACAGTACCTCTGTTGTTTGGAAATGTTCTTTGGCCCGTTACTCAGTAACCGCACATGATTCAGTCTGAAATCCATCCCCTCCGCTGTCCCTTATGGCCTTATATAAGTGACTCGCTAATAAAACACTGTAGAATAATTTCCCAGAAGTCCAGCATTCCTCAAATGTgctgactttaaaaaaagaggaagggatttttttttttgtcccagaTGACACGTGACTTGATATTTTTAGAGTATTCATTTCCTGCGTATTGTGTCTTTTCGTATTGTGTTACTGCATTCACATCAGTGGTCGGTTGTATCCTTCTAGTCCGCTTTATTGAGCTTTATCGAATACTTACGGTTAAAGAGATGAACTTTCTGTCATTTTGCGCCATTCCAAAACCCGCAGGACgctctttgttctgtggaaATACGAAACGAGTTCTTTTGAGGAATGTCTCCGTACGATAaaagtcagtggtgaccaaaaTGTTAGTTTACCAAAAAATCTCTGTACCCAAGCGTTCAACTTTGGCAAAACTCTTCATACGGTTTCAACAAATCGTGCGACTTGCACAAggagatattatttattattgattatcaCTTGGCAAGCGATAAGTCCTAAGAACGTCTATATGCCTACTATTGACAAGCTCGATTGAAGCACAAACTACTTTTTGCTTAATGGAGGAGATGAGCGTCATGAActtcaaatgctttttaaaatcaccTTTTCAGAGCCAACTGCTTGTCAAAACTGGTCGGCAATCATGCATAAGCATCGTCGGCGGCTCCACAGTGGccccaaaatgtattttgcgaCGCTTACTAACGCCTGGATTTGGTTgcagatgttttgaagaacgTGTCATTGGTCGCGTGAGGTGTGTGCTTGTAGGGCAAAGCATTTCTGTGCCTCCTAACGCTGCAGATAATGCTGCCATGTAGGAATGCTTGGCTCGCCGAGCTGGTCACGTGAGTCGTTATCCATCACTTCACTTTCCTCTTCACAACATGGTGGTTTGGTTTGGCCGCTGGAGCTCTCTGAAGTGTCTTCGGACGGGCCTGTCCGCATGATGCGCCGATCTCCAGGTTAACCGCATGTTGTTGTGTTTAGCCTATAAtagttttatgcattattattcaTCGGGTTACGTAATGCTTTCTGATTTGTAAGAGGAATGATTGTTGGTGAATAACTTAGATTTTGGTCTGTTCATCACACAGATGAATGACTCCCTCTGTTGGAGCCTAGCCTGCTTTGATGGTGCTTTTTGCGTATTTGAAGCATGAAGAAATTACCAAACACGATTTTTAGGAACTGAATGCCAAAACAATAAACtcactaattaattaaaaccttTAATTTAGCTTATCCATTCACTCATCGCCTAAAAGACTAGGCTGAATCAGACTCCTCCTTTTACGACAACACTGGACGCTTTATCTCTCCAACAGACCACGTGGACTCTTCAAGTAGCCTAACCGTCTTAAATTAAACGTCAGATGTCAAATTCACCATAATACGTAAAACGAAGCGCTGGATTATTTCCACATGTCTCGTGGCGAGCAACTTCTCTTCAACTTTAATCACGTGAAATTACAGCGCAACCACACGACAGCCTTTACGCGTCTCTTTCAAGTGCAAGCTTTCCAAACCGCTCAAaacacccccccaaaaaagtccGATCTTTGTTATTTAGTCTGCACGCGGACACTGTTTTCCCTCTTGGCGCGCTCGTGAACCGCGCCGCCGGTCGCGCGCTCGCTCGGTGTCGCGCGCGCTCCTTCATTCACAGCGGGACTCGGCGGGAGCAGCTCGTTTTCTCTCAGTGAGGAGAAGAGTTCGCTAAAGGAGCCGTTTCAACTCTCCGTCGTCCTCTGTGGAGCAGACCTCGTTAGATATTAGAGTTTCGGTCGAGTTTTAGTCGTCTCCGAAAGTTTACACGAGTTGCGCTCGTTTACGTTTCTTTTCAGACAGCTGTTATTTAGTTTCGTAGTAAATGTGGCTTATTTTTGTTGACGTTATTCGCGGTTAGATTTATTCACTTTATGAGGCGATGCCGATAGCTTTTTCGTCAAAGTAGCTTTATCCGTCACGCTTGGTCACTATATTTAATGGCTTTAATCCGTGTCGTGTGATGTTTGCTGTGTGGAAACCTAAACTCTTCACTTTGGCTTTTGCAGTTTTGACTGATCTTACTAGCGGCTTCTCGCAGGTGAACGAGTTTGGACAGCTGTTCCCAATCAGTTTTCCGTCCTCAATGGTTTGACTAATTCGCCGCCGCTGACAGAAGTCGCGAAAAACTTCCCTCCCGCGCGTTTCGGTTCGCGTTTGCAGTTGCGGACATGGATAAATACGACGATTTGGGACTTGAGGCGAGTAAGTTCATCGAGGACTTGAACATGTACGAAGCGTCGAAGGACGGCTTGTTTCGCGTGAAGAGAGACGCGGGAAACAACCCGGATTTCGAGGAGACCAGAAAAGTCTTTGCCTCGAAGATGACCAAGATACACATGCAGAAACAGCAAGAGGAGATGGCAAGGAACAGTCTGGCGGCGAGGCTCAACGGAAGTCATTCAAAAGTGACCGATAACGCGTTTTACACCAAAGACAGGCCACCGATCAATAGTTATAGACAGGGTGGAGAAACGGCAGCCAAACCCCCCATCATGTCTGGACCAACGGTTGTGACCCCGTACGTATCTTACGAAGGACAAAAGCTTTCGGCCGGCTTACCTGATGGGTCCGGCAACAGGGCTTATGAAATGAAGGAGGCTGTGAATGCTGTTAACCCCATACCAGTGCCAGCCCGATCAGCACCTTCTACCAGCCCCACTAGCACATGGGCGTCAAGAAGCGTTTACCCGCCTCAGACGCCATCATCTCCTTTCTCGAACAGTTCCTCCTCGTCTAGCTCACCTGGAGCGGGTCAGAGTTATTCTCCGTTGTCTCAAACGGGGAAGTCTCCCTCTCATTCGCCTACAGGAACATACAGGGATGCATATCACCAGCCTCAACAGGTTAGCTCTAGTCAGCACTGCCAACCAGTCTCTGCCCAGTGGCCTATCAGCGGACCGGCATATCAAAACGGGGGAGCTCATAATATCGGCACCCCCTTCCCTATCCAGGTGACCCAACCTCCGTTGTTCCTTGGAGGGAAGCAAGGTAGCCCCGAAGGAAGCCCTGCTCCAAGTAACCCAACAGTGCCCGCTTCTACCCCTGTTGAGTCGCCCCATGAAGAGTCTTCCCGGGCGCTCAAGCTGCCATGCCAGACCCTCCATGTACAGACAGATCAGGGGCCATCTGcggctgaaataaaattagaagCTCTAACCGAACGCCTGGAAAAGGAGATGGACGCCCAGCCAAAGGCTGAGTACTTTGGCAGCTGTGTGAAGTGCAGTCAGGCTGTGTATGGAGCGAGCCAGGCGTGCCAGGCCATGGGCAGCCTTTACCACGACAGCTGCTTCACTTGCAGCGCTTGCAgCCGAAAGCTCAGAGGAAAAGCCTTTTACTACGTCTGTGGGAAAGTCTTTTGTGAAGAGGACTTCTTGTACTCTGGATTCCAGCAGTCTGCTGACAAATGCAACGTATGTGGACATTTAATCATGGACATGATCCTGCAGGCGCTGGGGCAGTCTTACCACCCAGGCTGCTTCCGCTGCGCCATCTGTAACGAGAGTCTGGATGGAGTGCCTTTCACGGTGGACACGGAGAACAAGATCTACTGCGTGAAGGACTATCACAGaGTTCTTGCCCCTAAATGTGCAGCATGTAATCAGCCCATCCTGCCCTCTGAGGGGTCAGATGAAACCATTCGAGTGGTTTCCATGGACAAGGACTACCACGTGGAGTGTTATCACTGTGAGGACTGTCACATGGAGCTGAACGACGAGGAGGGTCACCGCTGCTATCCTCTGGACGGACGCCTGCTGTGTCACGCCTGTCACCTCAAACACATGGACCCGGCCGCCCCGCCGGCTCCAGCAGACAGCTTCCACAGTCGGTTTTAAACGTCTGCCTCCCCCTTGTGGGTGTTCAGAGACATCACCTTTGCCAAAGATGCTCGGCTGTCGCATTGCCAAGTCACAGACGAGATTGAGACACATTATTATGTTCAAATTATTTACTGTacggttttcttttctttgcatttaatattttgttagaTTGGATTCAAAGAAAATAGTTTAGCCTTTCTTGAATAATATAAATGCTGTCAGCAAGTCA
>XM_043261293.1
CCCGGGCGCTCAAGCTGCCATGCCAGACCCTCCATGTACAGACAGATCAGGGGCCATCTGcggctgaaataaaattagaagCTCTAACCGAACGCCTGGAAAAGGAGATGGACGCCCAGCCAAAGGCTGAGTACTTTGGCAGCTGTGTGAAGTGCAGTCAGGCTGTGTATGGAGCGAGCCAGGCGTGCCAGGCCATGGGCAGCCTTTACCACGACAGCTGCTTCACTTGCAGCGCTTGCAATCCTGCAGGCGCTGGGGCAGTCTTACCACCCAGGCTGCTTCCGCTGCGCCATCTGTAACGAGAGTCTGGATGGAGTGCCTTTCACGGTGGACACGGAGAACAAGATCTACTGCGTGAAGGACTATCACAGaGTTCTTGCCCCTAAATGTGCAGCATGTAATCAGCCCATCCTGCCCTCTGAGGGGTCAGATGAAACCATTCGAGTGGTTTCCATGGACAAGGACTACCACGTGGAGTGTTATCACTGTGAGGACTGTCACATGGAGCTGAACGACGAGGAGGGTCACCGCTGCTATCCTCTGGACGGACGCCTGCTGTGTCACGCCTGTCACCTCAAACACATGGACCCGGCCGCCCCGCCGGCTCCAGCAGACAGCTTCCACAGTCGGTTTTAAACGTCTGCCTCCCCCTTGTGGGTGTTCAGAGACATCACCTTTGCCAAAGATGCTCGGCTGTCGCATTGCCAAGTCACAGACGAGATTGAGACACATTATTATGTTCAAATTATTTACTGTacggttttcttttctttgcatttaatattttgttagaTTGGATTCAAAGAAAATAGTTTAGCCTTTCTTGAATAATATAAATGCTGTCAGCAAGTCA

Function

NR:

description
PREDICTED: LIM domain-containing protein 1

GO: NA

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261292.1 True 5577 mRNA 0.46 8 4905857 4929011
XM_043261293.1 False 853 mRNA 0.52 6 4905857 4924418

Neighbor

gene id symbol gene type direction distance location
smpdl3b smpdl3b,LOC107744599,LOC107703919,LOC107732739,LOC107688972 coding downstream 11750 4889483 ~ 4894107 (-)
LOC122360926 LOC107598923,LOC107756920,LOC107732735,LOC107660307,LOC107565651 coding downstream 106032 4795810 ~ 4799825 (-)
LOC122360932 grik3,LOC100334689,LOC105019312,LOC106605119,LOC102778608 coding downstream 291840 4511974 ~ 4614017 (-)
LOC122360353 LOC107713904,LOC107689171,LOC107559021,LOC107688989 coding downstream 662515 4203681 ~ 4243342 (-)
LOC122360352 zgc:91890,LOC107559041,LOC107689180,LOC107688990,LOC107713919,LOC107726234 coding downstream 745336 4159487 ~ 4160521 (-)
lars2 lars2,LOC107598928 coding upstream 147 4929158 ~ 4972573 (-)
clec3ba LOC107562407,LOC107732738,LOC107756909,LOC107689022,LOC107703910,LOC107576254 coding upstream 61967 4990978 ~ 4995038 (-)
fez2a fez2,LOC107756910,LOC107703924 coding upstream 66162 4995173 ~ 5004441 (-)
wdr26a LOC107598934,LOC107756916,LOC107562420,LOC107688974,LOC107732721,LOC108270098 coding upstream 83566 5012577 ~ 5025324 (-)
adcy3a adcy3,adcy3a,LOC107688975,LOC107703925 coding upstream 98159 5027170 ~ 5046883 (-)
G109836 NA non-coding downstream 41178 4864417 ~ 4864679 (-)
G109825 NA non-coding downstream 44826 4860248 ~ 4861031 (-)
G109824 NA non-coding downstream 47459 4855654 ~ 4858398 (-)
G109820 NA non-coding downstream 83171 4821555 ~ 4822686 (-)
G109819 NA non-coding downstream 86121 4818807 ~ 4819736 (-)
G109887 NA non-coding upstream 159890 5088901 ~ 5089304 (-)
G109891 NA non-coding upstream 248320 5177331 ~ 5177535 (-)
G109906 NA non-coding upstream 261339 5190350 ~ 5190705 (-)
G109907 NA non-coding upstream 261770 5190781 ~ 5191350 (-)
LOC122359853 NA non-coding upstream 269780 5198791 ~ 5207419 (-)
G109724 LOC107084717,LOC106511825 other downstream 810353 4094757 ~ 4095504 (-)
G109600 NA other downstream 1775878 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 2941696 1741120 ~ 1964161 (-)
G109287 NA other downstream 4023105 882459 ~ 882752 (-)
G109275 NA other downstream 4272960 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 303200 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 853656 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 888029 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 973566 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 1100197 6029208 ~ 6034777 (-)

Expression


Co-expression Network