smpdl3b (smpdl3b,LOC107744599,LOC107703919,LOC107732739,LOC107688972)


Basic Information

Item Value
gene id smpdl3b
gene name smpdl3b,LOC107744599,LOC107703919,LOC107732739,LOC107688972
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4889483 ~ 4894107 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261295.1
CCATTAAAACAGGGGGCTGGCTGTTTATTTGCTCCAGCTGACTTATCTTATCTCTCAGTTTATTGGCGGCTGTGAAATTAGCGTCTTATGAAGGATTACAGCAGTCAGATCAGAGTCTCTGGATCTCTCACGCGCATTACATGAAGCTGACAATGGCATGCGTTTGGAAAATGATTCTTCTCAACATTTTCGCCTTCGCCGGCGGAAGCAGCGCGATGAAAGCAGGTTATTTCTGGCACATCTCAGACCTCCACTGGGATCCTTCTTACGACGCAGGGAGCAGCTCTGCATCGAAATGTGCTTCTAGTGGAGGCCGTCCGACCCCAAACGCAGGCAGATTTGGAGATTATTCCTGTGATTCCCCGTGGACTCTGATAAACTCGACATTGAGTGCCATGAGAGAGATCCTGCCTGACCCGGACTTCATCATCTGGACCGGAGACGATACGCCTCATGTCCCCGACGAGCAGCTGGGAGTCGAACCTGTCCTGCGTATAATCGGCAATCTCACGCGCAtcataaaaaacacttttcccAATACCAAGGTGTACTCTGCGATGGGAAATCATGACTACCATCCAAAGAACCAAATGCCCCCGGGAAAAAACGTCATTTATGAGCAAACCGCAAACCTGTGGCACGACTGGCTACACGCTGCATCAAAAGAAACCTTTAAAACGGGCGGATATTACACAGAGAAGCTGCTGAATCAAACCGGCTTCAGAGTCGTGGTCCTAAATACAAACCTCTATTACGATCAGAACAAAGTGACGGAAAACATCAAAGACCCCGCGGATCAGTTCAGCTGGGCCGATAGAGTGCTTCAGGACGCAGCTAAGAACAACGAGAAGGTTTACATCATCGGCCACGTCCCTCCAGGGTTTTTCGAGAAGAAGAGAGATAAAGCCTGGTTCAGAAAGGAGTTTAATAAGCGTTATATAGATCTCATCCAGAAGCACAGCGCTGTCATACAGGGCCAGTTCTTTGGGCATCATCACACCGACAGCTTCCGCGTCTTCTACAGCTCGAAAGGATCTCCCGCAAGTGCAATGTTCCTGACTCCAGGAGTGACACCCTGGATAACAACATTACCTGGTGTCAGAGATGGAGGAAACAACCCTGGAATACGAGTCTTCGAGTATGACACCAAAACACTTTTGATCAAGgATATCTTGACCTACTACATGAACCTGACGTACTCGAACGTGGCGCGCGAGCGCTGGGAGAAGGAGTACCGGATGACGGAGGCGTTTCGTGTCCCCGACGCTTCTCCCGCCTCCATGCACCGCGCCATGGAGCGGATATCCAGCGACGGCCGTTATCTGCAGAAGTACTACGAGTTCAACTCCGTGAACTACGACCTGACGGAGTGCGGCGCCGACTGCCGCGTCGATCACGTGTGCGCCATCAGGGAGGTGGACTTCGACGCGTACGAGCGGTGCGTGCTGAAGGagggagctccgcccactgccccgctgctgctgcttcctctgctgctgtcaCTCACCCTCAGCCTGCTAGGCCTTCCGACCGGTGCATGAGTGTGAACGACACCATTAAGTACtttaactgaaatgtatttatttaccgAACTGTTTGATTTGCGTGTGAAGTGtggaaacaaaattaaaacatctgcaaatgAATGCTCATCTCGTGCCTTTGAGAGAACCCAAAGAATCAATAAACTGGGGAAGGctgtgactttttttccccatgcatGATCAATTATGTGCCACACATCAGTTGAGGCATCCAGGACTTTAATGTGTTTCCACGTGCATGTGCTCTTACACAATAAAAACGTTGTCCACCTCGAAAAAA
>XM_043261296.1
CCATTAAAACAGGGGGCTGGCTGTTTATTTGCTCCAGCTGACTTATCTTATCTCTCAGTTTATTGGCGGCTGTGAAATTAGCGTCTTATGAAGGATTACAGCAGTCAGATCAGAGTCTCTGGATCTCTCACGCGCATTACATGAAGCTGACAATGGCATGCGTTTGGAAAATGATTCTTCTCAACATTTTCGCCTTCGCCGGCGGAAGCAGCGCGATGAAAGGTTATTTCTGGCACATCTCAGACCTCCACTGGGATCCTTCTTACGACGCAGGGAGCAGCTCTGCATCGAAATGTGCTTCTAGTGGAGGCCGTCCGACCCCAAACGCAGGCAGATTTGGAGATTATTCCTGTGATTCCCCGTGGACTCTGATAAACTCGACATTGAGTGCCATGAGAGAGATCCTGCCTGACCCGGACTTCATCATCTGGACCGGAGACGATACGCCTCATGTCCCCGACGAGCAGCTGGGAGTCGAACCTGTCCTGCGTATAATCGGCAATCTCACGCGCAtcataaaaaacacttttcccAATACCAAGGTGTACTCTGCGATGGGAAATCATGACTACCATCCAAAGAACCAAATGCCCCCGGGAAAAAACGTCATTTATGAGCAAACCGCAAACCTGTGGCACGACTGGCTACACGCTGCATCAAAAGAAACCTTTAAAACGGGCGGATATTACACAGAGAAGCTGCTGAATCAAACCGGCTTCAGAGTCGTGGTCCTAAATACAAACCTCTATTACGATCAGAACAAAGTGACGGAAAACATCAAAGACCCCGCGGATCAGTTCAGCTGGGCCGATAGAGTGCTTCAGGACGCAGCTAAGAACAACGAGAAGGTTTACATCATCGGCCACGTCCCTCCAGGGTTTTTCGAGAAGAAGAGAGATAAAGCCTGGTTCAGAAAGGAGTTTAATAAGCGTTATATAGATCTCATCCAGAAGCACAGCGCTGTCATACAGGGCCAGTTCTTTGGGCATCATCACACCGACAGCTTCCGCGTCTTCTACAGCTCGAAAGGATCTCCCGCAAGTGCAATGTTCCTGACTCCAGGAGTGACACCCTGGATAACAACATTACCTGGTGTCAGAGATGGAGGAAACAACCCTGGAATACGAGTCTTCGAGTATGACACCAAAACACTTTTGATCAAGgATATCTTGACCTACTACATGAACCTGACGTACTCGAACGTGGCGCGCGAGCGCTGGGAGAAGGAGTACCGGATGACGGAGGCGTTTCGTGTCCCCGACGCTTCTCCCGCCTCCATGCACCGCGCCATGGAGCGGATATCCAGCGACGGCCGTTATCTGCAGAAGTACTACGAGTTCAACTCCGTGAACTACGACCTGACGGAGTGCGGCGCCGACTGCCGCGTCGATCACGTGTGCGCCATCAGGGAGGTGGACTTCGACGCGTACGAGCGGTGCGTGCTGAAGGagggagctccgcccactgccccgctgctgctgcttcctctgctgctgtcaCTCACCCTCAGCCTGCTAGGCCTTCCGACCGGTGCATGAGTGTGAACGACACCATTAAGTACtttaactgaaatgtatttatttaccgAACTGTTTGATTTGCGTGTGAAGTGtggaaacaaaattaaaacatctgcaaatgAATGCTCATCTCGTGCCTTTGAGAGAACCCAAAGAATCAATAAACTGGGGAAGGctgtgactttttttccccatgcatGATCAATTATGTGCCACACATCAGTTGAGGCATCCAGGACTTTAATGTGTTTCCACGTGCATGTGCTCTTACACAATAAAAACGTTGTCCACCTCGAAAAAA

Function

symbol description
smpdl3b Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3B (sphingomyelin phosphodiesterase acid like 3B).

NR:

description
acid sphingomyelinase-like phosphodiesterase 3b

GO: NA

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261295.1 True 1824 mRNA 0.50 8 4889483 4894107
XM_043261296.1 False 1821 mRNA 0.50 8 4889483 4894107

Neighbor

gene id symbol gene type direction distance location
LOC122360926 LOC107598923,LOC107756920,LOC107732735,LOC107660307,LOC107565651 coding downstream 89658 4795810 ~ 4799825 (-)
LOC122360932 grik3,LOC100334689,LOC105019312,LOC106605119,LOC102778608 coding downstream 275466 4511974 ~ 4614017 (-)
LOC122360353 LOC107713904,LOC107689171,LOC107559021,LOC107688989 coding downstream 646141 4203681 ~ 4243342 (-)
LOC122360352 zgc:91890,LOC107559041,LOC107689180,LOC107688990,LOC107713919,LOC107726234 coding downstream 728962 4159487 ~ 4160521 (-)
csf3r NA coding downstream 1145871 3729142 ~ 3743612 (-)
limd1a LOC107703922,LOC107744601,LOC107598949,LOC106579350,LOC107732724,LOC107688969,LOC107756905,LOC106605519,LOC107562399 coding upstream 11750 4905857 ~ 4929011 (-)
lars2 lars2,LOC107598928 coding upstream 35051 4929158 ~ 4972573 (-)
clec3ba LOC107562407,LOC107732738,LOC107756909,LOC107689022,LOC107703910,LOC107576254 coding upstream 96871 4990978 ~ 4995038 (-)
fez2a fez2,LOC107756910,LOC107703924 coding upstream 101066 4995173 ~ 5004441 (-)
wdr26a LOC107598934,LOC107756916,LOC107562420,LOC107688974,LOC107732721,LOC108270098 coding upstream 118470 5012577 ~ 5025324 (-)
G109836 NA non-coding downstream 24804 4864417 ~ 4864679 (-)
G109825 NA non-coding downstream 28452 4860248 ~ 4861031 (-)
G109824 NA non-coding downstream 31085 4855654 ~ 4858398 (-)
G109820 NA non-coding downstream 66797 4821555 ~ 4822686 (-)
G109819 NA non-coding downstream 69747 4818807 ~ 4819736 (-)
G109887 NA non-coding upstream 194794 5088901 ~ 5089304 (-)
G109891 NA non-coding upstream 283224 5177331 ~ 5177535 (-)
G109906 NA non-coding upstream 296243 5190350 ~ 5190705 (-)
G109907 NA non-coding upstream 296674 5190781 ~ 5191350 (-)
LOC122359853 NA non-coding upstream 304684 5198791 ~ 5207419 (-)
G109724 LOC107084717,LOC106511825 other downstream 793979 4094757 ~ 4095504 (-)
G109600 NA other downstream 1759504 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 2925322 1741120 ~ 1964161 (-)
G109287 NA other downstream 4006731 882459 ~ 882752 (-)
G109275 NA other downstream 4256586 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 338104 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 888560 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 922933 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 1008470 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 1135101 6029208 ~ 6034777 (-)

Expression


Co-expression Network