emc2 (emc2,LOC107600623,LOC107666844,LOC107679651)


Basic Information

Item Value
gene id emc2
gene name emc2,LOC107600623,LOC107666844,LOC107679651
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22179651 ~ 22208604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261301.1
TAGGAAAACATGTCGTCTATATCGGAGCTCTACGATGTTAGTTGGGAAGGTAAATGGCTTGTTTTCGTTAACAGCAGTTATTAAGATATTCGAAATGCGTGACAAACTGCGTAAGTGGAGAGAAGAGAATTACAGGAACAGTGAGCAGATTGTGGATGTCGGTGAAGAGCTGATTAATGAGCATGCATCTAAACTGGGAGATGACATTTGGATAATTTACGAGCAGGTGATGATTGCAGCGCTGGACTGCAGTCGTGACGATCTGGCCTGGAGTTGCCTGCAGGAGCTGAAGAGGCAGTTTCCAGACAGTCACAGAGTGAAGCGATTAGCAGGGATGCGGCTGGAGGCTCTGGAGAGGTATGAGGATGCCAATAAGCTGTATGACTCAATACTACAAGATGACCCTACTAATACGGCAGCAAGGAAGCGCAAGATCTCCATCCTGCGAGCACAGGGCAAAAGCAGTGAGGCCATCCGTGAGCTCAACGAATATCTGGAGCAGTTTGTGGGAGATCAGGAAGCATGGCATGAGCTGTCAGAACTCTACATCAATGAGCATGATTATGCAAAAGCAGCTTTTTGTCTTGAAGAGCTGATGATGACGAATCCACATAATCACCTGTACTGCGAACAGTATGCTGAGGTAAAGTACACCCAGGGAGGTCTGGAAAACCTCGAACTGGCCAGGAAGTATTTTGCGCAGGCACTGAAGCTTAACAACAGAAACATGAGGGCCTTGTTCGGCCTTTACATGTCGGCCAGTCACATCGCTGCCAGCCCAAAAGTGAGCGCAAAGGTGAAAAAGGACAACATGAAGTACGCAGCGTGGGCCACTTCTCAGATTAGCAGAGCCTATCAGATGGCGGGCCGTGGGAAGAAGGAGAACAAATGCTCGGTGAAGGCGGTGGAGGAAATGTTGGAGTCCATGCAGATCACCATGTCTTAAACCTCAGCTCTGCCCCCCCTCCTTCCCACAACCTCTGTCACCACAACACCATGGCAGCTCTCCCTGCTCACTATAgtacaccaccaccaccaccctcAGACCAGACCACCCAACCCAACCTCCTCTATATCAGTTCCTCCATCTTTGTATTGTTTTGAGGTCTCCGGGTAGGCTTCAGAAACCCTGAACCATTCCACAAGTTTCTTGATTCAACCTTCAGCActcctttatttattattaagagCTTATCGTTGGGTCAATTGGTGGAATCAAATGCGTCTGCGATGGAAGTGAGCGTGAAAAGGAAAATCTACTAATGTTTTTAGTTTGGTCAGTTCTTATAGTTTATAAGGGTTCGATTAGAGAGAAAACTGAGAAGATGGAAATGTACTTAGTGTATGTGCAAGAAACTGATGTCATGACTGATCTGTTTCttagcaaaataaatgaaccaGCTGGAAGATCAGTTTCTTTCTTAGCAAAATAAAGGACTGCATTTTTGACTAACCATA
>XM_043261302.1
CGTTAACTTACGACGTCACTGTCATCCACCAATCAGCTCACAAGGGGCGGAACTAGGAAAACATGTCGTCTATATCGGAGCTCTACGATGTTAGTTGGGAAGAAATGCGTGACAAACTGCGTAAGTGGAGAGAAGAGAATTACAGGAACAGTGAGCAGATTGTGGATGTCGGTGAAGAGCTGATTAATGAGCATGCATCTAAACTGGGAGATGACATTTGGATAATTTACGAGCAGGTGATGATTGCAGCGCTGGACTGCAGTCGTGACGATCTGGCCTGGAGTTGCCTGCAGGAGCTGAAGAGGCAGTTTCCAGACAGTCACAGAGTGAAGCGATTAGCAGGGATGCGGCTGGAGGCTCTGGAGAGGTATGAGGATGCCAATAAGCTGTATGACTCAATACTACAAGATGACCCTACTAATACGGCAGCAAGGAAGCGCAAGATCTCCATCCTGCGAGCACAGGGCAAAAGCAGTGAGGCCATCCGTGAGCTCAACGAATATCTGGAGCAGTTTGTGGGAGATCAGGAAGCATGGCATGAGCTGTCAGAACTCTACATCAATGAGCATGATTATGCAAAAGCAGCTTTTTGTCTTGAAGAGCTGATGATGACGAATCCACATAATCACCTGTACTGCGAACAGTATGCTGAGGTAAAGTACACCCAGGGAGGTCTGGAAAACCTCGAACTGGCCAGGAAGTATTTTGCGCAGGCACTGAAGCTTAACAACAGAAACATGAGGGCCTTGTTCGGCCTTTACATGTCGGCCAGTCACATCGCTGCCAGCCCAAAAGTGAGCGCAAAGGTGAAAAAGGACAACATGAAGTACGCAGCGTGGGCCACTTCTCAGATTAGCAGAGCCTATCAGATGGCGGGCCGTGGGAAGAAGGAGAACAAATGCTCGGTGAAGGCGGTGGAGGAAATGTTGGAGTCCATGCAGATCACCATGTCTTAAACCTCAGCTCTGCCCCCCCTCCTTCCCACAACCTCTGTCACCACAACACCATGGCAGCTCTCCCTGCTCACTATAgtacaccaccaccaccaccctcAGACCAGACCACCCAACCCAACCTCCTCTATATCAGTTCCTCCATCTTTGTATTGTTTTGAGGTCTCCGGGTAGGCTTCAGAAACCCTGAACCATTCCACAAGTTTCTTGATTCAACCTTCAGCActcctttatttattattaagagCTTATCGTTGGGTCAATTGGTGGAATCAAATGCGTCTGCGATGGAAGTGAGCGTGAAAAGGAAAATCTACTAATGTTTTTAGTTTGGTCAGTTCTTATAGTTTATAAGGGTTCGATTAGAGAGAAAACTGAGAAGATGGAAATGTACTTAGTGTATGTGCAAGAAACTGATGTCATGACTGATCTGTTTCttagcaaaataaatgaaccaGCTGGAAGATCAGTTTCTTTCTTAGCAAAATAAAGGACTGCATTTTTGACTAACCATA

Function

symbol description
emc2 Predicted to contribute to membrane insertase activity. Predicted to be involved in protein insertion into ER membrane by stop-transfer membrane-anchor sequence and tail-anchored membrane protein insertion into ER membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be extrinsic component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC2 (ER membrane protein complex subunit 2).

NR:

description
PREDICTED: ER membrane protein complex subunit 2-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23563 EMC2, TTC35; ER membrane protein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261301.1 False 1458 mRNA 0.46 11 22179651 22208551
XM_043261302.1 True 1468 mRNA 0.47 11 22179651 22208604

Neighbor

gene id symbol gene type direction distance location
trhra trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802 coding downstream 50142 22124696 ~ 22129509 (-)
sybu LOC107666828,LOC107713821,LOC107705165,LOC107551189,LOC107679650 coding downstream 178595 21991274 ~ 22001056 (-)
zdhhc3a zdhhc3a,zdhhc3,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding downstream 196848 21972672 ~ 21982803 (-)
kiaa1143 kiaa1143,zgc:77056,LOC107713807,LOC107600662,LOC107551194,LOC107679647 coding downstream 208944 21968837 ~ 21970707 (-)
osbpl10b osbpl10,LOC107600617,LOC107713824,LOC107551176,LOC107705753,LOC107668315 coding downstream 218160 21922962 ~ 21961491 (-)
cd83 cd83,LOC107705228,LOC107666866 coding upstream 121575 22330179 ~ 22332034 (-)
zgc:113232 zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324 coding upstream 126559 22335163 ~ 22344100 (-)
snrnp48 LOC107679653,LOC107551179,LOC107756216,LOC107600666 coding upstream 139046 22347650 ~ 22351043 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding upstream 211266 22419870 ~ 22523750 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding upstream 554600 22763204 ~ 22767288 (-)
G115170 NA non-coding downstream 305600 21873826 ~ 21874051 (-)
G115155 NA non-coding downstream 354214 21825198 ~ 21825437 (-)
G115098 NA non-coding downstream 790504 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 848293 21331012 ~ 21331358 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding downstream 864905 21283464 ~ 21314746 (-)
G115262 NA non-coding upstream 21636 22230240 ~ 22237066 (-)
G115335 NA non-coding upstream 474823 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 565162 22773766 ~ 22774032 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding upstream 677111 22885715 ~ 22888001 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 702275 22910879 ~ 22911323 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 90559 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 211116 21964855 ~ 21968535 (-)
G115149 NA other downstream 375847 21801475 ~ 21803804 (-)
G115141 NA other downstream 474692 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 565448 21605958 ~ 21614203 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 683498 22892102 ~ 22901187 (-)
G115554 NA other upstream 724023 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 1311204 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 1374389 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 1459461 23668065 ~ 23675345 (-)

Expression


Co-expression Network