LOC122360614 (scap,LOC107600505,LOC107717374,LOC107591983,LOC107668298,LOC107713836,LOC107666822)


Basic Information

Item Value
gene id LOC122360614
gene name scap,LOC107600505,LOC107717374,LOC107591983,LOC107668298,LOC107713836,LOC107666822
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21120769 ~ 21138481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261386.1
GTTGAGGGGTCAGGTTGGCTTACAGTAGCTGACATGATGCAGGCAGAACAGTACAGACTTACAGCCACCTGCCTGTGAAACTCAACAGGAGCCGAATCAGCGTTAAAACGAGCCCTCGGAGAGCAAGGGTAGAACCTGTCATTGGGATCCCTGGATGCCCGCCGGTGCCCTCGCCCTGGCCGCACACGCAGACTCAATGGCCATCAGCTGACCCCTCCTCCAAGGATGATGGTGAGAGAGCGGCTTCGGCAGAACATCTCGGCCGCCTTCTACCGGCACGGCCTGCTATGCGCATCCTACCCGGTTCCCATCATTCTCTTCACCTCCGCCAGCATCCTGACCTGCTGTTACCCTCTGCTGAAGCTGCCTCTGCCTGGAACAGGGCCTGTCGAGTTCACCACTGGAGTACGAGATTACTCAGTCCCATCCCATGAGTCTCAGGGTGACCCATCAGAGCACCCTGATTGGTATCGGGGTCCTCCAGTGGCCTACATCCAGCAGGTTCTGGTCAAGGCAGCAGTTTCACCATGGGACAACAGTCTGGTTCCTGTAGACGTTTTCCGTTCTCCCCTTGGGCGCGTTTTCAGTCTCCTGGAGGAGATCAGAAACCATGTTTACACAGACAGAAGTTTGGAGGCTCTGTGCTTGCAGGTAACAGACCTGTTGCCAGGGTTGCGGCGCATGCAGGCGGTCCTTCCAGAGCACGGCTGCCTGCTGGTATCCCCTGGCAACTATTGGCAGAACCGACGTGACTTGTTTGATGCAGATCCAGACCTCCTGAAGACGATCCACCAACATGAACCCAAAGGCCTTCATACTTCAGCCACTCTGAAAGATTTACTCTTTGGTGTCCCGGGGAAGCAGACGGGTGTAAGCCTGTACAGCAAGAAGAGAGTGGTGACGTACACAATCACAATTGCACTAAGCTCCTATGATGCAAGGTTTGTAGCCAGTCTTCGAGCCCGTCTGAAACAGCTTCATCCTTCAGCAAACTGCACTCTGCGTGAAGACCACATGGTGCATGTCCATTTCAAAGAGGAGATTGGCATTGCTGAGCTCATCCCTCTGGTCACAACCTACATCATTCTCTTTGCTTATATATACTTCTCCACCCGAAAGATTGACATGGTGAAATCCAAATGGGGTTTGGCTCTGGCCGCTGTGGTGACTGTTCTCAGCTCTCTGCTCATGTCTGTGGGACTCTGCACCTTGTTTGGCCTGACGCCCACGCTGAATGGAGGGGAAATCTTCCCTTACCTTGTGGTGGTAATTGGTTTGGAGAATGTCCTTGTCCTCACCAAGTCTGTTGTGTCAACGCCTGTCGATCTTGAAGTCAAGCTGCGTATTGCTCAAGGTTTAAGCAATGAAAGCTGGTCCATCATGAAGAATATGGCAACTGAGCTGTGTATCATCCTCATTGGATACTTCACATTTGTACCAGCAATTCAGGAGTTCTGTCTGTTTGCTGTGGTCGGTCTGGTGTCCGATTTCTTCCTGCAGATGTTTTTCTTCACCACTGTGCTGTCTATTGACATCCGCCGCATGGAGTTGGCTGATCTGAACAGGCGTCTCCCTGCAGAAGCGGGGATGCCTCCACCTAAACCAGGCCCTTTGCGTCCACGAGAGACACCTCCACCACCCCGCCCTTCTCCCCACACAATCACCCTGCAGGCTCCTGCGTTCCGGAACCTCCGCTTACCCAAGAGGCTCAGGGTGGTGTACTTCCTAGCCCGCACCCGCCTGGCGCAGAGAATCATCATGgTTGGCACCGTAATCTGGATTGGGATCCTGGTCTACACAGACCCTGCTGGTCTGAGGACTTTCCTTGCTGCCCAAGTGTCAGAGCAGAGCCCTCTTGGGGAGGCGGGGCTTCCTCCTCATTTGGGTGTTGCTCCAGTATTTCCTGGTGGAGACCCAACCAGCACACTAAGCGTGCTTCCTGCCCCTGAACCCACTCCTCTGCCTGAAAACCAATCGCAGGGTCACCGAGCAGCCCGCCCAGGAGTTGCCCCGGTGTCCAGCCCCCAGATCACTTGGGGCCCTGAAGATGAGGAGCTGTGGAGGCGGCTTTCTTTTCGCCACTGGCCCTCACTCTTTAGCTATTACAATATCACTCTTGCAAAGAGGTACATCAGCATTCTTCCAGTCATCCCCGTCACGCTCCATCTCAGCCCACAAGAGGCCATAGACACACGCCATCCTCAAGATACACAACACGCTCCCCCTCCCAGCATCAAGACCTCGGATCTGCAGACAGACCTCACACTCTACAAagtGGCAGCTCTTGGACTTTTCGCTGGAGTGGTGTTAGTTCTGTTACTCTTCTGTCTGTATCGTGTGCTCTGCCCTCGGAACTATGGGCAGAACGGGGTGCCCCATGGTCGCCGTCGCCGTGGAGACCTGCCCTGCGACGAGTACGGCTACTCTCCGCCAATCAGCGAAATTTCCCCTCTGCTGCTGAGAGGCCACAGCATGGACATTGAGTGTCTGGCCAGTGATGGCATGCTGCTGGCCAGCTGTTGTCTGGCGGGACAGATCCGTGTGTGGGATGCACAGACGGGAGACTGTCTTACTGTTATACCCAACAATGGtCTGCGCAGGAGCAGCAGCAGTGGTTGTTGGGAGCACCGTGATGGCTGGGATCACATAAGTGCTTGTGAAGCTGAGAGCCTCTTGGGGGCAGACTTTTGGGAGCCAGGAGGAGTAGCGATGGGAGGGCCAGATGTAGATATTTTTCCAATAAGGAGGAGGGCCACTCCTACACGCCCCGCCCTGTTTGGGGACCAGCCAGACCTCACTCCTCTCATCGACACCAACTTTGGGTCATTGCCCCCATCTCAGGCTCTAAGCAGCTCTGGCTTTGATTTCGGGGAATTGGTGGAGAAAGCATACCAGGAACATGAACCCTCACCAATACTGGCCTTCCCACCTTCTCCTTCGGCTTCACAGCAAAGGCGACGCAGCCTTGGGGACCAGCCTGTATTACCACCAGAGCTCCCCCCGCAGAGCAATGGGGACTGGGACAGTTCAGTGTGGGCCATGGAGCTGAGGGGTAACCTCATTGCCACAGGCCGCAGCAGCGGAAAACTGgagCTGTGGGATGCAGTAGAGGGATCATTACGGTGCAGTAATGAAGATGGAGTATCTGGAATCACCGCCTTGGCTTTTCTTAATAACAGAATTGTGGCAGCTCGTTTAAATGGCTCACTGGATTTCTTCACAGTGGAGATCAACAAGCCTCTGGGCTTGCTGCAATATCGTGGACCCCCAGGCCGAGGCAGTTTGCCCCCCTCGCCCTGTTACAGCAGTGAGGATGTGATCAGCTGTCAGCTGACACGCTCCGTGCAGTGTGCCCACCAGAAGCCCATCACTGTGCTCAAAGCTGCCGCCGGTAGAGTGGTCACCGGCAGCCAGGACCATACAGTCAGGgtataTCGTTTGGAGGATTCTTGTTGTCTCTTCACCCTGCAGGGCCACTCAGGTGGCATAACTGCCATTTACATAGACCAGACCATGGTTCTAGCCAGCGGGGGCCAAGATGGCGCTATATGCGTGTGGGACGTCCTAACGGGCAGCCGGGTGAGCCACGTTTACGGTCACCGTGGTGACGTCACCTCATTGGTTTGCACAACTTCCTGTATCATTAGCAGTGGTTTGGATGACCTCATTTGCATCTGGGACCGTAGCACAGGCATAAAGCTGTACTCCATACAACAGGAGGTGGGTTGCGGGGCCAGTCTCGGGGTGATCTCTGAAAGCCTGCTGGTGACGGGAGGACAAGGTTGCGTGTCGTTTTGGGACCTGAACTACGGGGACCTGCTGCAGACGGTGTACTTGGGCCAGAGCAGCGAAGGTCAGAGCGTCAGGCAGCTCCTGGTTCTGGACAATGCCGCCATAGTCTGTGACTTTGGTAGTGAGCTCAGCCTAGTCTATGTACCCTCTGTTCTGGAGAAGCTGGACTGAACACACACGTGAACACCAGCCCACAAATTTAGCGTATTTTCAGAGTGGCTGCCATAAAAGCACTCACCCTTTAACCTGCATCACCGCAGGTTTGTGAATGATGTTTCTCGGGTCCTCTCATGTACCACCCTATACTTGGTAGGGAGGGAGTGACCACTTTCTACTACGTCTGAACAGGATGTAAATGCAAAACCTGATTGTTTGGAGTTCAAAAGGCCTCTGATGCTCCATCGTTCAGATTATTCTGTGTATGAATCCAGACAGACAATTGCATAGCTGCTGACAGTGAGAGGTGGCTCACTTTGGCCTGCCTTAAGATGTCTGTTTGTGCACGTTAACAAGTTCACGGTGATATTGCCAGGCTGCCCAGCTCAGAAACTCTCAACTGTGTGACAGCTAGAGGTGAGAGAGTTCACAATAATATGTTTGCAGAGGGAGAGGAGGAACTGAAGGTGGTCGTTGGGGCAGAAAAAGGCATAGATATTTCCTGCTGAAAGGAGTGTGTTCTTTGTGTGTAACAGTGTTTGAGTGTTTGAATCTTCAGAAGTGTTCAGGTCATGTTGCACCCCATAATCAAAAGAATTCTTGAACATCTCAGCAATCGCATTGGAATTCCACTTGCAACCTTCCATAAAGACAAACCTATTTTAgtactaataatttttttatttttataataacaattaaactgccatatatatatatatatatat

Function

symbol description
scap Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

NR:

description
PREDICTED: sterol regulatory element-binding protein cleavage-activating protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261386.1 True 4676 mRNA 0.53 23 21120769 21138481

Neighbor

gene id symbol gene type direction distance location
LOC122360714 NA coding downstream 15552 21102727 ~ 21105217 (-)
LOC122360412 nek11,LOC107666729 coding downstream 18301 21056300 ~ 21102468 (-)
LOC122360415 LOC107592535,LOC107666756,LOC107686539,LOC107709748,LOC107556976,LOC107733997 coding downstream 81234 21038523 ~ 21039535 (-)
LOC122360416 nek11 coding downstream 254545 20826228 ~ 20866224 (-)
si:dkey-11p23.7 si:dkey-11p23.7,LOC107717350,LOC107666731,LOC107600543 coding downstream 353404 20764638 ~ 20767365 (-)
dek dek,LOC107600508,LOC107717375,LOC107592846,LOC107666821 coding upstream 689 21139170 ~ 21146077 (-)
LOC122361118 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 coding upstream 29500 21167981 ~ 21169404 (-)
ccne2 ccne2,LOC107717358,LOC107666792,LOC107600548 coding upstream 177298 21315779 ~ 21321087 (-)
tp53inp1 tp53inp1,LOC107666795,LOC107717380,LOC107600511,LOC107591975,LOC107668322 coding upstream 184430 21322911 ~ 21329991 (-)
nagpa nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811 coding upstream 195169 21333650 ~ 21346600 (-)
G114997 NA non-coding downstream 185 21118149 ~ 21120584 (-)
G114947 NA non-coding downstream 285534 20781803 ~ 20835235 (-)
G114943 NA non-coding downstream 351682 20768744 ~ 20769087 (-)
G114924 NA non-coding downstream 395098 20724171 ~ 20725671 (-)
G114908 NA non-coding downstream 440548 20677054 ~ 20680221 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding upstream 144983 21283464 ~ 21314746 (-)
G115051 NA non-coding upstream 192531 21331012 ~ 21331358 (-)
G115098 NA non-coding upstream 250334 21388815 ~ 21389147 (-)
G115155 NA non-coding upstream 686717 21825198 ~ 21825437 (-)
G115170 NA non-coding upstream 735345 21873826 ~ 21874051 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other downstream 103664 21012607 ~ 21017105 (-)
G114901 NA other downstream 467195 20651977 ~ 20653574 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other downstream 469832 20636125 ~ 20650937 (-)
G114793 NA other downstream 668319 20441965 ~ 20452450 (-)
G114715 NA other downstream 943011 20166795 ~ 20177758 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other upstream 237409 21375890 ~ 21378836 (-)
mettl6 mettl6,LOC107600537 other upstream 271478 21409959 ~ 21411772 (-)
trnae-cuc_38 NA other upstream 271479 21409960 ~ 21410031 (-)
G115116 NA other upstream 421740 21560221 ~ 21561216 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 467477 21605958 ~ 21614203 (-)

Expression


Co-expression Network