gsk3ab (gsk3ab,gsk3a,LOC107724158,LOC107671194,LOC107551697)


Basic Information

Item Value
gene id gsk3ab
gene name gsk3ab,gsk3a,LOC107724158,LOC107671194,LOC107551697
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13998237 ~ 14011670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261392.1
GCGTCGCTGTGCGTCAGCTCTAGTTGCCCAgccacagagaaagaaagaggaggcGCACAGTTTGCTATTGATAGAATAGTTCAgcaatcttaatattttttaacgattattatagtttaaattgACATATCCACTACGCGCCTGGGCCAGTCTACAGGCACAGTTTACCCCCGCTCTGGCACACTTGCAACCCGAAATGAGCGGCAGCGGGCGGCCCAGGACTAGCTCGTTTGCTGAGCCTCCGGGGGTCCCGGGAGCCGCTGCAGCCGCCGCCGGATCAGCCGTCGCTGGCGGAAGCTCTTCAGGAAAGACGGGGGGCGCGCAGGCCTCAGGCGGGAGTTCGTCTGGTTTCGGAAACCTAAAGCTGGGCAggGATAGTGGAAAAGTGACAACAGTAGTAGCCACACCAGGGCAGGGTCCGGACCGTCCTCAGGAGGTCTCTTACACAGACATCAAGGTGATCGGCAATGGCTCATTTGGAGTGGTGTACCAGGCTCGACTCATCGATAGCCAGGAGATGGTGGCCATAAAGAAAGTGCTTCAGGATAAGAGGTTTAAGAACCGTGAGCTACAGATAATGAGGAAGTTGGACCACTGTAATATTGTCAGGCTACGCTACTTCTTCTACTCCAGTGGAGAAAAGAAAGATGAAGTGTATCTAAATCTGGTGCTTGATTTTGTACCAGAAACCGTGTACAGGGTGGCACGCCACTTCAACAAGTCTAAGACCACCATCCCCATTATCTATGTCAAAgTGTATATGTATCAGTTATTTCGCAGTCTGGCATATATTCATTCCCAAGGCGTCTGCCATAGAGACATAAAGCCACAGAATCTCCTGGTGGACCCAGACACAGCTGTACTCAAACTGTGTGACTTCGGCAGCGCAAAACAGTTAGTTCGCGGGGAGCCCAATGTGTCATACATCTGTTCGCGGTATTACCGCGCTCCTGAGCTAATATTTGGAGCCACGGATTACACATCCAACATTGATATCTGGTCAGCTGGCTGTGTATTAGCAGAGCTGCTTCTGGGACAGCCCATATTCCCCGGTGACAGTGGAGTGGACCAGCTAGTGGAGATCATCAAGGTTTTGGGGACCCCGACAAGAGAACAGATCCGAGAGATGAACCCCAATTACACAGAATTTAAATTCCCACAGATCAAAGCACACCCTTGGACGAAGGTGTTTAAGCCGAGGACCCCTCCTGAAGCCATCTCATTGTGTTCTCGTCTGTTGGAGTACACACCGGTGACGCGGCTCTCTCCGCTGGAGGCCTGTGCACACGCTTTCTTTGACGAGCTGCGCCAGCCGAATGCCCGTCTGCCTAATGGCCGAGAACTTCCCCAACTCTTCAACTTCAGCCCTGTGGAGCTGTCTATCCAACCACAGTTGAACTCCATTCTCATTCCTCCCCATGCTCGCTCGCAGACGACACCTGCCTCACACGagGGCAGCGGTTCAGACGGTCCAGCCCAGTCTAGCTCAGCACCGGGACCCCTGAGCAACAACACCTAATTGTTCCCTTGGCATTACTGCGACGTTATCACCCCTCTCTCCTCATCCCTTCTTTCTCATTCCTCTCTCCTTCCCAAAAGCAGCTCCAAACAGTCTCTCTcgcacacgctctctctctcacaaacgCACTCGTCACCTCGTGTTATGTGTCGTCATGATGAAAGTGTGCGATGCCCAGATTAACGACGTCAATCATCACAGGAGATAATGAGGTTGATTTAAATTTAGCATGATGATTGTCATGTTTAAAGGCTGGGAAGGGCCGCTCGGGGCACATGTGCCCCCTAGTGGCAGGAAGAGCACCGCACAGTTACTGCTCTCTGCCTCTAGTACCATCCATTTGACTTTTAAACAATGCGTCAagctcatttaaatgaaattttgctCTTAAAGTGATACGTTTTAGCTTTCTTTAGGGGTTCTTGCACAAAGCAAGGACTGCGATGGGTTTTATGAAGCAGCGAGCGTGAGatgtcagtgtttgtgtgtcaggaTGTGCTGTTTCTCTTCGCAGAGATGAAAATGGGTGTCTTAATATGTGCGAATGtcaatttttaatgaatcattgcACACTcttatgttttaatttcttttaaggGGAATATTTGGAGAAGTCGGgacaaggtgtttttttttctttggggGGTCGGGTCAGTTTCATTATAAAACATgctcactttatttttttgttttttgtgcatgcgcatatacacaaacacacacatatagctGGTAGGTCAGTCCCGTCACTGGCTGTGTTAGCTGTTCTGTTGTGCATTATGGAGTCtatgccgtgtgtgtgtgtttctatacATCGGCATGCCCGTTAAATGTGGATTTAGCTGGTGTTCATCTAAAAGACACTTTGAtacatgagcacacacacacacacacacaccatgaacacTTAGCAAATAAGACTGGAGCTGTTTCCTTCCCTTCTTCCATCTTTCCTATCTCCTCCTCTCTCATTGCTAATATGTAAATGCCATGtaccttttattttgttatttttgttattgttattctgTTGTCCTTGTAATTAGATTTTTCTCCTAGTGGAGCAGTGCTGGTATGAGCAGAAACCAGCCTTTCTTggtctctctatctctttctctctctcgcccgCCCTCCTCCCTCCTTTCCTCCctctttcctcctcctttccTCCTATCCCTTCATACAACTGTATATAACATTTCATCCAGCCTCTCCCTGCATCTGGGGAGAAAgacaaaactgaacaaaattttgtttttacctGATATCTCCGTCTCTTTCTCTTACTCTCTCTCCTCGCCCGCCCGCCCGCCTGCCTGCCCTTCCCCCTCCTCATCAGTGTTAATTCTGatccttttatttattgtattgctGTCTGATTCTGTTTTTAACAATCTGATGGGGGaggggtttgtgtgtgtgatgtcatTTGGTGTAACGTTCATATCTCAAACTCTGGAATATTGTCTGATGGAATGTTCTGGAAAGGGCAGGTACACACTACCACACACAGGCTGCTCGGCCCATCAGCGAAAAGATGAACGGttaaagggagagagagggagagataaacaatgtttttgtttgttggtataaataataaactcatTAATAAAGTTA

Function

symbol description
gsk3ab Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within cardiac muscle cell development; dorsal/ventral pattern formation; and heart looping. Predicted to be active in axon; cytosol; and nucleus. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha).
gsk3a Enables protein kinase A catalytic subunit binding activity; protein serine/threonine kinase activity; and signaling receptor binding activity. Involved in several processes, including negative regulation of glucose import; negative regulation of glycogen synthase activity, transferring glucose-1-phosphate; and positive regulation of protein metabolic process. Predicted to be located in microtubule; mitochondrion; and postsynapse. Predicted to be part of beta-catenin destruction complex. Predicted to be active in axon; cytosol; and nucleus. Implicated in amyotrophic lateral sclerosis.

NR:

description
PREDICTED: glycogen synthase kinase-3 beta-like

GO:

id name namespace
GO:0055013 cardiac muscle cell development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08822 GSK3A; glycogen synthase kinase 3 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261392.1 True 3139 mRNA 0.48 10 13998237 14011670

Neighbor

gene id symbol gene type direction distance location
znf574 LOC107717428,LOC107700188,LOC107551698,LOC107724156,LOC107582032 coding downstream 1965 13977757 ~ 13996272 (-)
grik5 grik5,LOC107717427,LOC107551699,LOC107700189,LOC107671209 coding downstream 27008 13910503 ~ 13971229 (-)
LOC122360057 LOC107707784,LOC107580961 coding downstream 98422 13894615 ~ 13899815 (-)
LOC122360471 LOC107707784,LOC107580961 coding downstream 110719 13881158 ~ 13887518 (-)
ceacam1 NA coding downstream 122708 13866380 ~ 13875529 (-)
cicb LOC107717431,LOC107551694,LOC107700186 coding upstream 9293 14020963 ~ 14058189 (-)
erfl3 erfl3,LOC107582036,LOC107724159,LOC107671192,LOC107551693,LOC107700185,LOC107717433 coding upstream 49083 14060753 ~ 14103280 (-)
pou2f2a pou2f2a,pou2f2,LOC107717432,LOC107671217,LOC107551663 coding upstream 104867 14116537 ~ 14152861 (-)
dedd1 LOC107551690,LOC107717438,LOC107700182,LOC107671190,LOC107582037,LOC107723479 coding upstream 159498 14171168 ~ 14182105 (-)
atp1a3b atp1a3b,LOC107551687,LOC107700181,LOC107723432,LOC107582039,LOC107717437 coding upstream 175571 14187241 ~ 14208217 (-)
G112449 NA non-coding downstream 88501 13909324 ~ 13909736 (-)
G112448 NA non-coding downstream 96624 13901137 ~ 13901613 (-)
G112447 NA non-coding downstream 97161 13900864 ~ 13901076 (-)
G112426 NA non-coding downstream 211784 13785015 ~ 13786453 (-)
G112369 NA non-coding downstream 219432 13777269 ~ 13778805 (-)
G112464 NA non-coding upstream 98478 14110148 ~ 14110462 (-)
G112473 NA non-coding upstream 196726 14208396 ~ 14210533 (-)
G112474 NA non-coding upstream 199023 14210693 ~ 14210939 (-)
G112479 NA non-coding upstream 281069 14292739 ~ 14296572 (-)
G112483 NA non-coding upstream 291454 14303124 ~ 14303535 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 314328 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1619788 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 2130922 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2586460 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2611244 11333175 ~ 11386993 (-)
G112478 NA other upstream 222884 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 486593 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 570809 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 887512 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 896950 14908620 ~ 14913646 (-)

Expression


Co-expression Network