rasip1 (rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383)


Basic Information

Item Value
gene id rasip1
gene name rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13592032 ~ 13604741 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261420.1
ACAATGGGCCTGTTTCTCTATCTATAGACGCAGAAAAGGGGAGAAAGAAAcgagaaagaaatagaaagcAAGAATAAGGACTCGAGGACCATTCTCATACATCGAACACGAAAAAGACATGCTAAAAACCGGGTGAAAGGACACATTTCTGTACAGCAAAGCAAAGCCTCGTGCAGAAAATGGACTATTTAAGCCTAATTATTTTGGAGTAAGGAGACACAGAACTGACCTCCActggtatttattttatattattataatacactTCACAAACAACGGCCATTCTGAAGATTTATCCTGATATAAAGAGGAAGCCCGTCACAGTGGATGGAGGAGTCTGGCAGTCCCCGATTTAGGAAGCTCCATTTCCCAGTGGGCTTGTGGATAAATTCTCCACGGAAACACTTTGCCAAGCTGGGAGCTCGCTGGCCCAGTGCAGCATCAGTCAAATCTACAACCAGCTCAGATGCCGCTTCCCTTCCCGAGGCCCCATCATCAGtcccttcctccctctctcactCCACCCCTTCTCTTGCCCCACCCTCTCCATCCCCTTCTCCGGCCTTCCTCCGCCCTCGCCCCGCCAATCAGCAGTCCCGGGCCAAGCGGCTGTCTCACCTTTTCCTGAGAGGCCGGTCCAACAGCGACCGAGACCGTGCCATTGGAGAACGTGAGAGGGAAATATGGGTGCATTCTGCCACCCCTTCATCACATCACTACCTGCCTcccgcttcctctaatgccccCGGGCTGGTCAAGATCTATGGAGATGCCCTGTCCAGTGGAGCCAACTATCGGAGCCTGCTGGCAAACGTGCACTCCACCGCCCGCCAGCTCATTCAGCAGGTCATCACACGCTacactgagagagaaagagagaacgagAGTGAAGACACAGCTCTCCAGAAATATTCCCCCGAGGACTTCCTGTTATGTGATGTCATTGGAAAGCCCATTCACCAGGCAGATGGAGCCATCAAATGGCAAACAGAGTGCCGGAGGGGCGTGGCTTCCTGGGAATGCCCCTTACAGCTGGTGGATATGTGGAGGCCGAAGGATGGCTTCGAACGACGCTTTGAGATCCAGCGCCTTGATGAATatgagagggaggagaaagagaaggaaagagagagagagagggatggagaGAGCCATCAAGGAGTCCGTTGGAGGCGGAGCCGCATGTCCTCTGGGGGCGGGCCAGAAGAAGAGCGAGGTCATCGAGGGCGGAACACAGAACTGAGGAGGAGTATTAGTGATATGAACCTGAGTCTAAGACGTCGTCAGGGCAACACCAGCAATGACCCTCGGCGTTCTGGCAATGCCCCAAATGGACAGGATAGAAAGAACATAGTGAGCATGATAGCAGCTGAAGGAGGAGAGGTCACTGGGTCAAGAAGTGGAggtgagacagacagacgcacTCGGGCAGCCGAAGAAGAGAGCGACACCTGTGACCTGGAAGTGATGTCGCAGAGTCTGATCCTTCCACCGACAGACCGGCCTTACTTCCTGTTACTGCAAGGCTATGACCAGAGCAAGgACTTCGTGCTGTACATAATGGCGGGTCACACACATGTTTTTGGGCGCAAGCCCACGTTCCGTGAGCGCGAGAtggacagggagagagagaggaaggggaAGAGGCCTCTGAAAGTGGACACTTACCTCTCGGCTCCTGACCTGCTCGCCCGACACCTCCTGATCAGAAGAGACACGGCCGTCCCAGAACAACCGCGAGGTCAAGccGTGGCCCGTCCATTCAGAGGAGGACCTGTCACTCTTAACGGAGCCCCACTTTATAGGGAAGCAGTCCTTAAGCCCGGAGACTTGTTGGGTATTGGCAGCCACTTCCTTTTCCTTTACCGCGACCCCCGCGTGACCCCCGCCGCTCCCCTGGCCTTACCGCCACCGTGGCAAGGTGACATGTCAACTTCCTACGGCCCTGGCGGGATGACAGATAGACAGGAAATGCACCGGCAGTATCTGGGGTCCACAGAATCGCTGCTGAGATTCCAGGCCAAACATGCGGACGCCCTGCTGCAGGAAATTATTTCGAAGAACTCCAGCCCAGATTCAGGGGGCGGGGCTTTAGCACCTGCCTATCTTCTGTCGCTCATGATTGACTACGCCTCTAAACATCTGGATCCGGTATTATTACCTCAGCTACTTTTAaaggcagccaatcagatcaaAGGAATTGTTTGGGACAAAATTAAAGAGTTCGGTGACAAACATCCAACACAAAActcagCAGAGGCTGACGTTGAACTTCCTCCGCCGAGCGTGCAGAAGCTCTCCTCTGACCTTCGACCTCTTATGTTCTGGATGTCCAATGCCACAGAGCTCCTCAACTTCTTTCAGGTCAAAGTTGAAGCCATGGAAAAAGAATGGGAATTTGAAGCCCCAGGTGACCCCGTTCTCTCAGCTGATATGGACACCTGTTCTGATGCTCTGGCACAGCTGGATGATGTCATTATGCACACCTTCCAGCAGTGTGTTTACCATCTGACCAAGaCGTTATACTCTTTGCTCCCAGCACTGTTAGACACTAACCCGTTCTCCAgtgaggagaagaagaaaggaaaagCAGGACCGAAGGACAGAGCTGGTAACGAAGGGGAAGGGGACGAGGAAGAAGACGTCTCCACTTTGCCGCCCACCGTCGCTGGTCTGGTGGAAGTGTATCGCTGCTCTCTGCAGCTTTCTCGAGACGCTTGCCTCTCTCCACCGCTAACCTCCCAAACATTTGGCTACCTCTTCTTCTTCACAAACACGTCTCTGCTCAACACACTCTTGGAGCGAGATTCCCTATTCTCTTGGTCACGTGCCGTTCAAATACGAACAAATCTGGACCTGGTCTTAGACTGGCTACAAGGAGCAGGCCTCGGAGATATTGCGTCAGAGTTTCTAAAGAAGCTATCAGTCACGGTCAACTTCCTGTGCATACCTAAGACCCGCCTTATTCAGTCATCCTGGTCAAGTTTACAGGAAGAGCATTCCTTGCTAAGTCCTTCCCAGCTTCACCACCTTCTCACTCATTATAAGCTTGGACCAACGAGAGCCTCGCCATCTTCATGGGCTCCTCCTCTTGGTACAGAACTTGGAGGTGacatttttgagaGTTTCTTGGACCATCCTCCTCTGATCCTGCCTAACGAGACACCTCGCCTGGACCTGACTCAGCCAATCCCAGGCTCTGAGTTAACGAAGGAAGTGACACGCCTGCGGACGTTCCTGTGGGGGCTCGACCAGGATGAACTTCCCGCTAATCAGCGGACTAGACTGTAACATTAAATAATTCCAGTTGTCAGATTATGAACATTATCTAGTACTCACATAGAGAAACTACCAGTCTTTAGACACACGTAAGCTACATAAAGGCCCGTTCATATCAGATgacattcttcttcttcttcttcttttttgccTGTCAAGCACATCTGTTTGATTTTAATGGATATACACTGACTTCATTATgaatatgcataattaattgcatttgttaCCCTGAGGGTTTATGCCAGAAGAGATTCATTGCCTGGTTGCAATGATAAATGTCAGTCTGCTATTTTACACAATATTCAAAGTTCtgtagtttttttccccccactgtTAATCTTAAATATGACACTAAACATTTCAAGCAAGCTGTTATGATCAGATAAATCAGTTgcattgaatattttttcacatgtctgtaataaataaaaattgcatttaaccaa

Function

symbol description
rasip1 Predicted to enable GTPase binding activity. Acts upstream of or within vasculature development. Predicted to be active in cell-cell junction. Is expressed in dorsal aorta; intersegmental vessel; and posterior cardinal vein. Orthologous to human RASIP1 (Ras interacting protein 1).

NR:

description
ras-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261420.1 True 3728 mRNA 0.50 16 13592032 13604741

Neighbor

gene id symbol gene type direction distance location
il11a NA coding downstream 18437 13565402 ~ 13573595 (-)
znf628 LOC107724809,LOC107549478,LOC107744293,LOC107598382,LOC107672962,LOC107692578 coding downstream 27805 13556250 ~ 13564227 (-)
nat14 nat14,LOC107724968,LOC107549449,LOC107744294,LOC107692586,LOC107672977,LOC107598397 coding downstream 36069 13552540 ~ 13555963 (-)
aicda aicda,LOC107549448,LOC107692585,LOC107724977,LOC107744312,LOC107598400,LOC107672983 coding downstream 43720 13546280 ~ 13548312 (-)
epn1a epn1,LOC107672968,LOC107598387,LOC107724817,LOC107744298 coding downstream 75530 13506631 ~ 13516502 (-)
si:dkey-26c10.5 LOC107549484,LOC107724725,LOC107700203,LOC107672979 coding upstream 69015 13673756 ~ 13678258 (-)
tpi1b tpi1,tpi1b,LOC107672981,LOC107724698,LOC107700200,LOC107744284 coding upstream 90018 13694759 ~ 13701743 (-)
gnb3a gnb3a,LOC107549492,LOC107672997,LOC108432288,LOC103042898,LOC102782474 coding upstream 148673 13753414 ~ 13760343 (-)
p3h3 p3h3,LOC107700158,LOC107724912 coding upstream 159263 13764004 ~ 13770786 (-)
cxcr3.3 NA coding upstream 230779 13835520 ~ 13838704 (-)
G112350 NA non-coding downstream 48721 13534721 ~ 13543311 (-)
G112327 NA non-coding downstream 120346 13449507 ~ 13471686 (-)
G112339 NA non-coding downstream 130307 13455557 ~ 13461725 (-)
G112336 cacng7b,LOC107724890,LOC107549472,LOC107598394,LOC107672975,LOC106570002,LOC105902015 non-coding downstream 144854 13440670 ~ 13447178 (-)
G112315 NA non-coding downstream 157737 13431144 ~ 13434295 (-)
G112361 NA non-coding upstream 1890 13606631 ~ 13609334 (-)
G112377 NA non-coding upstream 13946 13618687 ~ 13619336 (-)
G112385 NA non-coding upstream 43886 13648627 ~ 13736231 (-)
G112390 NA non-coding upstream 54264 13659005 ~ 13659470 (-)
G112363 leng8,LOC107724921,LOC107700201,LOC107744285,LOC107672965,LOC107549486,LOC107598384 non-coding upstream 83765 13688506 ~ 13693963 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1213583 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1724717 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2180255 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2205039 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 2305600 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 49319 13654060 ~ 13683909 (-)
G112478 NA other upstream 629813 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 893522 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 977738 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1294441 14899182 ~ 14904907 (-)

Expression


Co-expression Network