hoxa13b (hoxa13b,LOC107743224,LOC107685614,LOC107596755,LOC107744698,LOC107550814,LOC107684536)


Basic Information

Item Value
gene id hoxa13b
gene name hoxa13b,LOC107743224,LOC107685614,LOC107596755,LOC107744698,LOC107550814,LOC107684536
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11646850 ~ 11648869 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261455.1
TCGTCTCGCTCGATCGGCTTTATCTCCGGTTTAGACGTTTATCGGCCTCTTTGGCGCGTCACGTGCCTCCGCTCGTCCAATGACAGCAGGACCTCGAAGCACACGGGACGCGTGGGTATCTGTTACTCCACCGATCCACCGCTTCCCTTTCAGTCTTGGGGAATTCTAAAAGAGCTGGTAGGCTCCATGTAGGGCGTGCTATGACAGCGTCTTTACTCCTCCACTCCCGCTGGATCGACCCGGTGATGTTTCTCTATGACAACGGCTTGGATGATATGAGCAAAAACATGGAAGGATTCGTGGGAGGCAATTTTGCCGCTAACCAGTGCAGGAATCTTATTGCCCACCCGTCTTCTCTGGCCCCGAGCACAACCTACACGTCGAGTGAGGTGCCGGGATCGGGCATGGGGGAACCTGTCAAACAATGCAGTCCGTGTTCGGCCGTACAGAACTCTCCTAGCGCTTCTCTGCCCTATGGATATTTCGGCGGCAGCTATTACCCGTGTAGGATGCCCAAGTCCTGCACGCAGCCCGCCTCCTATGGGGAAAAATACATGGACACGTCTGTTTCTGGAGAGGAGTTCCCTTCCCGCGCTAAGGAATTCGCCTTCTACCAGGGTTACTCGTCTGGCCCTTACCAGCCCGTACCGAGTTACCTCGACGTGCCGGTCGTACCTGCGCTGAGCACCCCCGCGGAGCCCAGGCACGAGTCTCTCCTGCCCGTCGAAACGTACCAGCCCTGGGCGATCACGAACGGATGGAGCAGCCCGGTGTACTGCCCTAAAGACCAAACGCAGTCAAGCAGCTTATGGAAATCGTCTATTCAAGACGCCGTGTCGGGTACCGACGGAGCCTCGGTGCGCCGAGGGAGAAAGAAGCGGGTCCCCTACACCAAGGTTCAACTGAAGGAACTAGAACGAGAATACGCCACAAATAAGTTCATCACTAAGGACAAACGGAGAAGGATATCGGCTCACACGAACCTGACCGAGCGACAAGTGACCATCTGGTTTCAGAACAGGCGGGTGAAAGAGAAGAAAGTGGTCAACAAGTACAAAGGCATCAGTTAAGGTCCGAAAGCGGCAAAAACTGAAATACCGAACGGGTATGAACGGAAGGACCTTCACTATTATTTATTCTGATATCCATCCCGTCATCTGGTCCGCGTCTAGAGACCGCGCGCGCGGGGATGCGCaggaaggggaaaaaatatatatatttaacttccCTGCGTGCATCTTACCAAGACACCGACCACGATATAAAAGACGAAGATCGACGAAGCCATATCCACCACCTGGTTATTCGTTATAATCTATAATGTATTTGGCAAAGACGTGGGAGGAATGTAAAATACACTTTCAGCAGAGAAAATCACTGAAgtaaacaaaccaaacaataaGTGtagacttattttttttttgttttcacacatcCAGAAACCGCCGTGGATCGCATGCTACGCGAACTGTGCAGTAGATTTACCCCCGAGTCGTGACGGATTTTTGTTCAgagctttttttcctctcatatTTACCCCGCACGCACGTTTGTAAATAGCCTAACAAAGTCGCTTTACAGGCACCTGCGAAGTATACAAATTCATTCATGTGTTGCTGCAGACGGTTTGCAAATAACCCTCTCCCTCCCCCTATATTAAATGATGTACAACCACATTTGtatctttataa

Function

symbol description
hoxa13b Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within fin development and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including chondroblast; pectoral fin; pectoral fin bud; pectoral fin field; and tail bud. Human ortholog(s) of this gene implicated in Guttmacher syndrome and hand-foot-genital syndrome. Orthologous to human HOXA13 (homeobox A13).

NR:

description
homeobox protein Hox-A13b-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261455.1 True 1691 mRNA 0.51 2 11646850 11648869

Neighbor

gene id symbol gene type direction distance location
hoxa11b hoxa11b,LOC107743198,LOC107596728,LOC107685585,LOC107744726,LOC107684537,LOC107550813 coding downstream 5341 11639005 ~ 11641509 (-)
hoxa10b hoxa10b,LOC107685613,LOC107743223,LOC107550811,LOC107744724,LOC107684558 coding downstream 10247 11633490 ~ 11636603 (-)
hoxa9b hoxa9b,LOC107743222,LOC107684557,LOC107744723,LOC107685612,LOC107550810,LOC107596757 coding downstream 13506 11629099 ~ 11633344 (-)
hoxa2b hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758 coding downstream 15945 11619513 ~ 11630905 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding downstream 32592 11598331 ~ 11614258 (-)
hibadhb hibadhb,hibadh,LOC107685537,LOC107550829,LOC107744697,LOC107743154,LOC107684541,LOC108441516 coding upstream 4344 11653213 ~ 11662232 (-)
jazf1b jazf1,LOC572950,LOC107743157,LOC108441515,LOC107684540,LOC107550831,LOC107685586 coding upstream 38426 11687295 ~ 11704828 (-)
cpvl cpvl,LOC107743225,LOC107684544,LOC107745375,LOC107550833,LOC107685540,LOC107596754 coding upstream 126105 11774974 ~ 11779980 (-)
fkbp14 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding upstream 171918 11820787 ~ 11823551 (-)
colq colq,LOC107743227,LOC107745382,LOC107684559,LOC107685587 coding upstream 191032 11839901 ~ 11854994 (-)
LOC122361126 NA non-coding downstream 77113 11562878 ~ 11569737 (-)
G111516 NA non-coding downstream 102518 11543916 ~ 11544332 (-)
G111508 NA non-coding downstream 158023 11487682 ~ 11488827 (-)
LOC122360676 NA non-coding downstream 165623 11480106 ~ 11481227 (-)
G111453 NA non-coding downstream 380025 11266596 ~ 11266825 (-)
G111559 NA non-coding upstream 14049 11662918 ~ 11666274 (-)
G111623 NA non-coding upstream 125050 11773919 ~ 11774181 (-)
G111625 NA non-coding upstream 131918 11780787 ~ 11781172 (-)
LOC122360397 NA non-coding upstream 134826 11783695 ~ 11784334 (-)
G111639 NA non-coding upstream 169590 11818459 ~ 11819778 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 235073 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 259857 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 360418 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 763426 10857520 ~ 10883424 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 882545 10745576 ~ 10764305 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 216811 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 714916 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 2005191 13654060 ~ 13683909 (-)
G112478 NA other upstream 2585685 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2849394 14498263 ~ 14503136 (-)

Expression


Co-expression Network