tgfb2 (tgfb2,LOC107598937,LOC106584161)


Basic Information

Item Value
gene id tgfb2
gene name tgfb2,LOC107598937,LOC106584161
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5138694 ~ 5170630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261461.1
GGGCGTTAGGACCTGGCCGCAGTGCTGAAGAGGAACGCTATTTACACCGAAGCGCTCGGTAAACCCTCGCGCTGACGAATCCCTCGGACTCACCGTGATGACCACAACCACGTGGTGAAGTCGGTCCTATATAAATCTCTCTCTCCAACCGGCTGCCTTCAGATGTGCATGCGTGCGCTGGCACGGGGACCGTTGTTTTCCACCAGAAGGAACAGAGGAGTGCGTAAACCGAAAAGGAGGTCTCTTTTGGTAGTTTACCCCATCGTCGGGCAGCCTCAGGACGCGTTTTCGTTTTTTTCAGCATCTGCTGGAGGAGGAGAGGCGATGCGCCTTGCGGAGTGAGCAGAGGCTTTTCCTGGACCTCCACATCTTCTCACGCGCGAGAGGCAGGCGTGATTGCGCGGCGCTTTGGAGAGAGCTCGCGGCGCTCTGATGCGGTGGAGGTGCGCGCAAAAAGCCCGCAGGCGACGCGTCTGTCAAAACAAGAGCTTTGCGAAGCAGAAACTTTTGACGGCCCAATCGATGGCTCTTTTAGCGCCCCGCGACTCCGTGCACTTGCTATGAAGTGATCTGGAATGAAGATCTCAGTTTCTCTCCCGCATATATCGGATCTGACAGCCCATTTCTCGCTGGCGCCTCGGATGGATTTGCAGGTACAGTAAACACAGACGTTTGCCGTTGATGATAGCGTGCGCAAAAAGTTAAATCTGGCTTCGCCATCGAAATGATCGGGCTTCTGCGTCACTTCATtcattaattagcattttcaaaCTCGCTTCGGCTTCGAAAACAAAAGCGCAAAATGAACTGGTGCGTCTTGAGTCTCCTTCTGACCTTGGATTTAGCCACGGTGGCCGTCAGCTTATCCACATGCAGTACTCTGGACATGGAGCAGTTCAAAAAGAAGCGGATCGAGGCCATCCGCGGTCAGATCCTCAGTAAACTCAAGCTGAGCAGTCCTCCCGAGATCTACCCCGAGCCCGAGGAGGTGTCCCGGGACATCATCGCCATCTATAACAGCACACGGGACCTGCTGCAGGAGAAAGCCAACGAGCGCGCGGCCACCTGCGAGAGACAGCGCAGCGAGGAGGAGTACTACGCCAAAGAAGTGCACAAGATAGACATGCAGCCCTTCTACCCCGCAGAGAATGTCATCTCTCCAACACATTACAACCCGTACTTCAGGAGGCTCAGGTTTGACGTGAGCTCAATGGAGAAGAACGCCTCCAACCTGGTGAAGGCAGAGCTCAGGATCTTCAGGCTGCAGAACCCAAAGGCCCGTGTGTCTGAGCAGCGGATTGAGCTCTACCAGATTTTAGGTCACAAGGACCTGACGTCTCCCACGCAGCGCTACATCGACAGCAAGGTGGTGCGCACCCGAACGGAGGGAGAGTGGCTGTCCTTCGACGTGACGGAGGCCGTCAGCGAGTGGCTGCTGCACAGAGACAGAAACAATGGATTCAAGATCAGCCTGCACTGTCCCTGCTGCACATTTGTGCCGACAAATAATTACATCATCCCCAACAAGAGTGAGGAGCTGGAAGCGCGCTTTGCAGGCATAGATGACAGCTTTGTGCACGGCGGGGACCTGAAGATGTTTAAGAAGCGTCGTCACAGCGGTCAGTCTCCACACCTGCTGCTGATGCTGCTCCCGTCTTACCGTCTGGAGTCACAGCACAAGAGCCACAGACAGAAACGTGCTCTGGACGCCGCCTTCTGCTCCAGGAATGTGCAGGACAACTGCTGTTTACGCTCTCTCTACATCGACTTTAAGAAGGACCTGGGCTGGAGGTGGATCCACGAACCCAAAGGTTATAACGCCAACTTTTGTGCTGGAGCCTGTCCTTATCTTTGGAGCGCAGACACCCAGCACAGCAACATCCTTGGCCTCTATAACACCATCAATCCAGAAGCGTCCGCATCTCCTTGCTGCGTGTCTCAGGATCTGGAACCCCTCACAATCCTTTATTACATCGGAAAAACCCCCAAAATTGAGCAGCTCTCCAACATGATTGTCAAGTCCTGCAAGTGCAGCTAGGAACCGATCGGCTCCGTTTCCGAGAACACGCATTCACTcgaacaaacacacagtaattTAAAACCCAATCACATGCGCGTGCCGGGCAGTCCTACAGACTCTCGCATCTGAACGTGTGAACTTGTCCTGGATACGGCCCCGCCGGCATGCGTCACATCACCCGCTCGTCACTCTATGGATGTGAGTTTGGCAAACACTGGAAGTACGTGATAGGTGTCTATATGTGAAGCAAGAGGAAGAGAAAATCCCTTGTTCCATTTATTTCAAACCaacacttctgtttttttttgtgtgctgttGTCGATTTTGTTTCCCTCAGTAATACagatattgtttgtttggtaATATATAAAACCCATGATATTGTTCACCGATACTGGTGAAGAGCTGAAAACTTCTTGCAAACAGTTGACTCAAATGAACTTTGAGTTTGGtgtaaaataagtgtttttgtaTAGGAGCTGGCAACAGAAAGGGGGGTTGAAATATTCCGGAAAGTTAATGCAGGACTCAGAAAGACATAGTTTAAACCACCTTGCATGGTGTAAAAAAAGGCCAAGACCAATAAGCCGTGTTGTTCCACTGCGAACAGAAACATTCTCTACACAAATACGCAATTGCACACGCAAATGCTGCAAAGCAAAACCATCGCATTTTTGTATCACTGTGGCAGAAACAAACACAGTTTCCATCTGCACCATTAATACAAATGCTTTATTATGCAGATAGCTGGATATAAACATGCTCAGAAAGATTCTCTTCAAACCGTTGCTCTGCCATGACATTATCGGACCTGGAAGAGAAAAGTATGCTAGTCCACTGTAGCGCCCCTGAGAATGCAACGTGTACTTGTGATATTTAGTTGTGTTTCAGAACTTAACAGCGTGTGAATCTGAGCTTGCAAAGCAAGAAGTGTTTATGATTATGTACGTATATGTGGAAGAACGTTAAACGCCTTATTCTATGAATTTATGTTAGCTAGCTCTTATTCTTGACACAGATCATTTGTAAACATCACAACGACACCTGCGAAAAAGCCCCAGGCAGAAACGCCGCCTGTAACGCATGCCTGAAAGTGAGTTGCTTTAGGATTGGCAGAGAACAgtctttactgtatttaagGTGACTCTGTTACTCTgtgtactgagtaatattaattaactacatgtacttactgtagTAGGGTTAAGTACGTGCGACTACGCCACCTAAAATAGTGTTTGCACTGTTTGCATGGTTTGAAAACAATTcacaaattaaaacagcataatGACCAGAGCATGTTGTGCCTGGTTAAACTGGAATACAGGTGGCTAGCAAAAAGCATGctgacttatttttatttcacccACGGTCCCTTATTAGAGGAGGTGAAGCTGTGATGTCACCAACTCAACAGCGTTGAAAGGAAGTGATGTCTTCAGACTGGTACAGAGACCGAGGCGAGGGCAGGTCATTTGCAGTAGCTATGTTTACATGCACTAATCGAAAAGAGTCCAGTACGAATTAGATTCTCGAATCTCTTTTTACGCTGTTTAACTTATTTGTTAACGCGCGTTATTACATTAATTCCAAGCAAAAATATGGTAAccttttattttctgatttagACATTCTTCTAACAGTAAGTAGCTTTGTAACTACGTCAACTAGCGGTcgttagagtattagtagaatatcttttattaagaaaaaaatgaagcatgtAAAGCACCCCTTTAAATTCTATCGAaattttggtagcactttagaataggtaacatgTTATGAATGTTAACTATCAGCTAAtatttttccctcaataaattcttaatttgcttcttattaatagttagtgcggtagttgttaagtttaggtatgaggtaggattagggatgtagaataatggctaatattatagtaatatgcatgctaataaacaactaatagGTATAAccatgaaattatttttttgttgaatcGTTTCAATGAAGGCTTTTTACTCCAGTCCAATTGAAAAATGGATCATTTGGGTGCATGTAAACGTAGCTATTGATGTGAGAAGAGTGAGCAGCTTTAGTAAAGTCAGAGATTTTGATTAAAGGATTTGAAGAATGTGAGCAGACGTATAATGGACGTGTAAGTGAGAGATGGTAACATCCTTTGAGCATGTTGTGCAGAGGCCAGCTTGACGAACGCACTGCAGCCGCCGCTGACGATGACGTCTATAACGCTTATCATGGAGAAAAGGTTTCTACGCATCTCAAAAGTGTCGTCCTaaatttgtgattttgttttctctcagagAAAGTGATCCTTTGTTACGAAGAATTGCACTGActattttatttctgcattttttgatTTGTaacttttgtttgttgttttttattcgTAGTTATAGCTTCACCCTCATAACGTGAGCTGATGATGTGAGTGGCTTCCAGGTGGAGGTTCCCCTTTTAACTAGTCCTTATCTTAACCAGTGTTAGAGAGAAACTGGTGGCAGATCAGATTAAAAGAGCAACGTCCGTTTTTTTAGGTgacacttattttatttgtattaggGCAAGAAAGCCAGTGGACTTCCTGCGGACACAGGAAGTGGAAGGAGACACCAGCATTGTCACACTAGAgctgtttattgttattgttgtctatgatgatgatggtgatgatgatgttgataTTGTTGACCCACTATGATGtattgtaacacattactgttGTGGTGCTCTAGtggtaaataaattatttaagtGACGA

Function

symbol description
tgfb2 Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within roof of mouth development and sclerotome development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including mandibular arch skeleton; mesoderm; otic placode; pericardial region; and periocular mesenchyme. Human ortholog(s) of this gene implicated in Loeys-Dietz syndrome 4 and colorectal cancer. Orthologous to human TGFB2 (transforming growth factor beta 2).

NR:

description
transforming growth factor beta-2-like

GO:

id name namespace
GO:0060022 hard palate development biological_process
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K13376 TGFB2; transforming growth factor beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261461.1 True 4784 mRNA 0.45 7 5138694 5170630

Neighbor

gene id symbol gene type direction distance location
lyplal1 lyplal1,LOC797125 coding downstream 43099 5090511 ~ 5095595 (-)
adcy3a adcy3,adcy3a,LOC107688975,LOC107703925 coding downstream 91811 5027170 ~ 5046883 (-)
wdr26a LOC107598934,LOC107756916,LOC107562420,LOC107688974,LOC107732721,LOC108270098 coding downstream 113370 5012577 ~ 5025324 (-)
fez2a fez2,LOC107756910,LOC107703924 coding downstream 134253 4995173 ~ 5004441 (-)
clec3ba LOC107562407,LOC107732738,LOC107756909,LOC107689022,LOC107703910,LOC107576254 coding downstream 143656 4990978 ~ 4995038 (-)
rrp15 rrp15,LOC107598955,LOC107737032,LOC107703929,LOC107689025 coding upstream 3020 5173650 ~ 5176812 (-)
ppp1r8b ppp1r8b,ppp1r8,LOC107564517,LOC107689150,LOC107688979,LOC107713931 coding upstream 185357 5355987 ~ 5360418 (-)
LOC122361376 NA coding upstream 188880 5359510 ~ 5359679 (-)
rpa2 rpa2,LOC107713930 coding upstream 196702 5367332 ~ 5379962 (-)
tpbgb LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023 coding upstream 247843 5418473 ~ 5420640 (-)
G109887 NA non-coding downstream 49390 5088901 ~ 5089304 (-)
G109836 NA non-coding downstream 274015 4864417 ~ 4864679 (-)
G109825 NA non-coding downstream 277663 4860248 ~ 4861031 (-)
G109824 NA non-coding downstream 280296 4855654 ~ 4858398 (-)
G109820 NA non-coding downstream 316008 4821555 ~ 4822686 (-)
G109891 NA non-coding upstream 6701 5177331 ~ 5177535 (-)
G109906 NA non-coding upstream 19720 5190350 ~ 5190705 (-)
G109907 NA non-coding upstream 20151 5190781 ~ 5191350 (-)
LOC122359853 NA non-coding upstream 28161 5198791 ~ 5207419 (-)
G109914 NA non-coding upstream 76608 5247238 ~ 5321296 (-)
G109724 LOC107084717,LOC106511825 other downstream 1043190 4094757 ~ 4095504 (-)
G109600 NA other downstream 2008715 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3174533 1741120 ~ 1964161 (-)
G109287 NA other downstream 4255942 882459 ~ 882752 (-)
G109275 NA other downstream 4505797 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 61581 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 612037 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 646410 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 731947 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 858578 6029208 ~ 6034777 (-)

Expression


Co-expression Network