cops7a (cops7a,LOC107717457,LOC107700164,LOC107582055,LOC107671210)


Basic Information

Item Value
gene id cops7a
gene name cops7a,LOC107717457,LOC107700164,LOC107582055,LOC107671210
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14464588 ~ 14472118 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261469.1
CTCACTCTCGCGATCGCTCTGTGGCCACGCCCGTCCTTGAATCGCTCCGCCAATCAGAGAGCACGTTTCCATGTCGCAGCACGCTTGCTAGCGGAAGTAGCAGTGGCACCACAGTTGACACAAACAACCTCAGTCTTTATAAATAAGaTGGAGGTGGATCAGCTGCTGTCTCTCTCAGGTTCAGCTCTGGCTCAGGCCATCAGCTCTCTGTTGGAAACCCCAGGTCTCTATGTTTTCTCAGACATACTAGAACTGCCCAACGTCCGTGAGCTGGAGACGGGTCCCCACGCTCCAGTGTACCGGCTTCTCAATCTTTTTGCGTATGGAACCTACTGCGACTATAAAGAGAGGGCAGCCTCACTTCCTGAACTCACACCCGCCCAGAAGAACAAACTCCGTCACCTGTCAATCATCAGCCTGGCCTCTAATCTAAAGTGTCTGCCGTATTCACTACTGCTCCAGCAGTTAGAGCTGAAGAATGTGCGTGAGCTGGAAGACCTGCTGATCGAGGCCGTTTACAGCGACATTATCCACGGGAAACTGGACCAGAGGAACCAGCAGGTCGAGGTAGATTGCAGTATAGGTCGAGACCTCGGCCCCAACGAATTACCCAACATTGCCAATACGCTGCAGGAGTGGTGTGCCGGCTGTGAAGCAGTTCTGTGTGGCATTGAGGAGCAGGTGTCAAGAGCCAATCAATACAGAGAAAGCCAACTGAAGGTCAAAGTTCAAGTCGAAAcagagGTATCAAACCTGCAAAAAACCCTCAAGGCAAGTTCAGCTTCCCCATCTTCTGGCCCCGCCCCTGCTGGAGCAGCATCCAATCAAGATGCAGACCAGCCAGCTGAGCCAAGAGACCCTGCCTCCTCTCAGGAACCGCGGCAACCCGGAAAAAAGAGCTCAAAAGTCAAAGgGCTTCGTGGGAGTGGAAAGATTTGGTCAAAGTCAAATTGATCGCGATCCCCGAGTTCAATCTTCAGTTACCCGCTCACAGACAGATACATTGTGGACTGCTTTCttggatagacagataaataaaccttttaccACTTCTCAGACAAAAATCTGCCATCACAGTCTAATACGACTTTTACACAAGGCTGGGTGCGTGTTTATGTACGTGTGTGCtgcaaatgtcatttaatttgaCTCATACTCCTTTTCTTTttcgtgtttgttttttttgttcgttaTTAAATCTGGATGTAAATTGATGAAGccaatgaataaatgatatcCATCTGTCA

Function

symbol description
cops7a Predicted to act upstream of or within COP9 signalosome assembly. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to several human genes including COPS7A (COP9 signalosome subunit 7A).

NR:

description
PREDICTED: COP9 signalosome complex subunit 7a

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12180 COPS7, CSN7; COP9 signalosome complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261469.1 True 1247 mRNA 0.49 8 14464588 14472118

Neighbor

gene id symbol gene type direction distance location
znf384b znf384,si:ch211-154o6.2,LOC107671195,LOC107582054,LOC107717452,LOC107700169 coding downstream 18925 14433256 ~ 14445663 (-)
gnl1 gnl1,LOC107717451,LOC107551674,LOC107700168,LOC107671206,LOC107723463,LOC107582120 coding downstream 32119 14424493 ~ 14432469 (-)
ddr1 LOC107551675,LOC107700170,LOC107671180,LOC107723396,LOC107582051 coding downstream 51267 14382802 ~ 14413321 (-)
tubb5 tubb,tubb5,LOC108432309,LOC107700172,LOC107717448 coding downstream 93163 14366214 ~ 14371425 (-)
mdc1 LOC107717447,LOC107700173,LOC107551678,LOC107723400,LOC107671182,LOC107582047 coding downstream 98833 14357553 ~ 14365755 (-)
si:ch73-86n18.1 si:ch73-86n18.1,LOC107717455,LOC107700163,LOC107551672,LOC107723521,LOC107582056 coding upstream 896 14473014 ~ 14476471 (-)
LOC122360687 LOC107717454,LOC107700162,LOC107573687,LOC107723374 coding upstream 4497 14476615 ~ 14483144 (-)
LOC122360168 NA coding upstream 34065 14506183 ~ 14508585 (-)
LOC122360167 NA coding upstream 38707 14510825 ~ 14515708 (-)
LOC122360169 NA coding upstream 45943 14518061 ~ 14524116 (-)
G112612 NA non-coding downstream 136385 14327952 ~ 14328203 (-)
G112483 NA non-coding downstream 161053 14303124 ~ 14303535 (-)
G112479 NA non-coding downstream 168016 14292739 ~ 14296572 (-)
G112474 NA non-coding downstream 253649 14210693 ~ 14210939 (-)
G112473 NA non-coding downstream 254055 14208396 ~ 14210533 (-)
G112659 NA non-coding upstream 119244 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding upstream 161096 14633214 ~ 14638332 (-)
G112686 NA non-coding upstream 243098 14715216 ~ 14715491 (-)
G113034 NA non-coding upstream 419922 14892040 ~ 14892395 (-)
G113039 NA non-coding upstream 474477 14946595 ~ 14947384 (-)
G112478 NA other downstream 162969 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 780679 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2086139 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 2597273 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 3052811 11410678 ~ 11411777 (-)
dicp3.3 NA other upstream 26145 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 110361 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 427064 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 436502 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 498423 14970541 ~ 15015462 (-)

Expression


Co-expression Network