Gene
RNA
| Item | Value |
|---|---|
| gene id | G10359 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 16354892 ~ 16355198 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| serine/threonine-protein phosphatase alpha-2 isoform-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU11411 | True | 307 | lncRNA | 0.33 | 1 | 16354892 | 16355198 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000000_16339900_16340277 | ATOX1 | coding | upstream | 14511 | 16339900 ~ 16340381 (+) |
| CI01000000_16282545_16293288 | MTNR1AL | coding | upstream | 60227 | 16282126 ~ 16294665 (+) |
| CI01000000_16226281_16275284 | FAT2 | coding | upstream | 79415 | 16226281 ~ 16275477 (+) |
| CI01000000_16142079_16144991 | NA | coding | upstream | 209613 | 16142079 ~ 16145279 (+) |
| CI01000000_16106717_16114328 | EMX1.2, EMX3, EMX1 | coding | upstream | 240537 | 16106598 ~ 16114355 (+) |
| CI01000000_16362843_16368520 | SPARC | coding | downstream | 7493 | 16362691 ~ 16368520 (+) |
| CI01000000_16375958_16382103 | G3BP1 | coding | downstream | 18760 | 16373958 ~ 16382558 (+) |
| CI01000000_16468276_16479177 | NA | coding | downstream | 112291 | 16467489 ~ 16481059 (+) |
| CI01000000_16573665_16580545 | SLC25A48 | coding | downstream | 218467 | 16573665 ~ 16580958 (+) |
| CI01000000_16611284_16612778 | CPLX2, CPLX1 | coding | downstream | 256086 | 16611284 ~ 16613885 (+) |
| G10358 | NA | non-coding | upstream | 60 | 16354572 ~ 16354832 (+) |
| G10357 | NA | non-coding | upstream | 1038 | 16353638 ~ 16353854 (+) |
| G10356 | NA | non-coding | upstream | 1285 | 16353404 ~ 16353607 (+) |
| G10355 | NA | non-coding | upstream | 2197 | 16352414 ~ 16352695 (+) |
| G10354 | NA | non-coding | upstream | 2724 | 16351855 ~ 16352168 (+) |
| G10360 | NA | non-coding | downstream | 535 | 16355733 ~ 16355938 (+) |
| G10364 | NA | non-coding | downstream | 31144 | 16386342 ~ 16386725 (+) |
| G10380 | NA | non-coding | downstream | 68160 | 16423358 ~ 16427175 (+) |
| G10869 | NA | non-coding | downstream | 169387 | 16524585 ~ 16524785 (+) |
| G10878 | NA | non-coding | downstream | 180070 | 16535268 ~ 16535522 (+) |
| G10201 | NA | other | upstream | 424330 | 15930266 ~ 15930562 (+) |
| G9201 | NA | other | upstream | 2119951 | 14215024 ~ 14234941 (+) |
| G7522 | NA | other | upstream | 4175884 | 12178369 ~ 12179008 (+) |
| G7514 | NA | other | upstream | 4217884 | 12136522 ~ 12137008 (+) |
| G7153 | NA | other | upstream | 5109259 | 11244457 ~ 11245633 (+) |
| CI01000000_17339270_17345013 | CXCL14, CXL14 | other | downstream | 983956 | 17339154 ~ 17346200 (+) |
| G11465 | NA | other | downstream | 1528755 | 17883953 ~ 17887462 (+) |
| G11521 | NA | other | downstream | 1677541 | 18032739 ~ 18164112 (+) |
| G11801 | NA | other | downstream | 2325669 | 18674116 ~ 18745376 (+) |
