LOC122360683 (rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127)


Basic Information

Item Value
gene id LOC122360683
gene name rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27613773 ~ 27621631 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261498.1
CTTAAGATGAGACAGCAGGGCGAAACTTGGTTGACGTAGCCCAGCAACATCGTATCAAAGTTGATTAGCTGTAGTTTTGGCTAACTCGGGTCCTATTTTTCTCAACGATTACTTAACATACAACAGCCCGCAAAGGAAACAcgttgtgtatttttattgttgtttaaaaatagtCTTTAACGCACGAGCGCGTAGTAATGAAGCGCTCGTGATCAACCGATGCGCCTCATAAACAAAGTTTCTTTGACGTCGCAGTAAATATAATAGCACTTTGCGGTTTTCCAGAAGAGCGTAACGTCTATCTGAAAACACGGACTCGTTAATAAGCCGGTAAGAAGATTAAAGCCATGACGGGTAGAGAGGACGAGTATGACTATCTCTTTAAAGTGGTTCTGATCGGGGACTCGGGTGTGGGCAAGAGTAACCTGCTCTCTCGCTTCACCCGCAATGAGTTCAACCTGGAGAGCAAGAGCACCATCGGGGTGGAGTTTGCCACTCGCAGCATCCACGTGGAGGGCAAGACCGTCAAGGCCCAGATCTGGGATACGGCTGGACAGGAGAGATACAGGGCCATCACGTCGGCgtATTACAGAGGTGCCGTAGGAGCCCTGCTGGTGTATGACATTGCCAAGCATCTGACCTATGAGAACGCCGAACGCTGGCTGAAAGAGCTGCAGGATCATGCTGACAGCAATATTGTCATCATGTTAGTAGGGAACAAAAGTGACCTGCGCCATCTGAGGGCCGTTCCGATGGATGAAGCCAAAGCCTTTGCAGagaaGCATGGACTTTCTTTTCTGGAGACCTCAGCGCTGGACTCCTCTAATGTTGAGCTTGCCTTTCAGACCATTCTCACAGAAATCTACCGTATCGTGTCCCAGAGGCAGATGTCAGGGCGCGGTGATGACGGCTTCTCCCCCAGCTCAAAAGTGGTTCCCATTACCGTGCAGCCCACACAGAATTCGGGCAAGCAGGGCGCCTGCTGTCAGAATAACTGAGCTGCCGCAGCGCCACCATGGGATCCGTGGAAAATCGGCAACTTTGTTGGGCTGGGCTGCAAGGTTGACCCGTGTTCCCTGCGCACAATGTGATTAATGTATGTAACGGACTTGCTTAGCTATGCCCAGAGTAAGTGAGTAGTAATCTTCAAAATTGGAGAACAAGAGATGTTGAAATTGAACGGATTAAGGATTTTCTCAGAACTGAGAGGCCATGCTTCTTGTTTCAGACTAATTAGAAATGAGCAGTTAACTGGGACGCTCAGACGtggctgctcttttttttttttttattattattcccgCACTTTTTGCTACAGACGGTCTGCTTACAAACAATGGGCTGAGGAACAAGGAAAAAGTGCTTAGAGTGCATAACGCTTCTTTTGAGTATCTCTTAAATGGTTTTTGATCACACTTGtgaaatcatatatatttttttccttcctttagCGTGCCAGCACAGAAGTAGTCTGACATCTTTTCCATGCATCTCGACACCTGAGAAATTCAAACTGTGGTCATCATAACCGCCTTTTTCGCTCAACTCTTACATCGAACAGCATCTCTTGTATTTATTGAATGCAAATATGATCTTGTTATTCTATGGTGggaatttttttcctttcttttttgtcaTGCTTTTATCCATCAGTAGATTATCGATCGGAATTTCTCAAGGGTTTCTCCTTCCAGTCATGGCACTCATTTGTACAAGCGCTGGGAGTGTTTTCTGTGGACAGAGTCGTGTTAATAGGTTAAGTTAATGGCCGTGTGTGCTGTAGTGTAATAAGAATATAGTGTGTTCAGATTTAGGGTTTGGGAAGCGCTGACTAGTTCTTAAATGATCTGATTATTTCTATGACACTCGATTCGGTTAACGGTTCTTGAACTTGTGTTTTCTACATCTCtgatatttatgcataataaaatatgcacaatagaacaacttaaaa

Function

symbol description
rab11al Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Is expressed in several structures, including EVL; hatching gland; integument; periderm; and polster.
rab25 Enables myosin V binding activity. Involved in several processes, including positive regulation of cell population proliferation; positive regulation of epithelial cell migration; and pseudopodium organization. Located in cytoplasmic vesicle and pseudopodium.

NR:

description
RAB11a, member RAS oncogene family, like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261498.1 True 1954 mRNA 0.45 5 27613773 27621631

Neighbor

gene id symbol gene type direction distance location
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding downstream 54801 27538393 ~ 27558972 (-)
si:ch211-269k10.4 NA coding downstream 231984 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 355763 27242882 ~ 27258010 (-)
zdhhc11 NA coding downstream 371034 27229786 ~ 27242739 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding downstream 385205 27214090 ~ 27228568 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding upstream 6926 27628557 ~ 27630274 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 10135 27631766 ~ 27637531 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 63636 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 68809 27690440 ~ 27693938 (-)
tmem176l.4 NA coding upstream 275097 27896728 ~ 27900760 (-)
G116814 NA non-coding downstream 1273 27612068 ~ 27612500 (-)
G116812 NA non-coding downstream 4808 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 21747 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 124094 27378560 ~ 27489679 (-)
G116727 NA non-coding downstream 135130 27438512 ~ 27478643 (-)
G116833 NA non-coding upstream 54357 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 79495 27701126 ~ 27704934 (-)
G116835 NA non-coding upstream 84975 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 330937 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 339000 27960631 ~ 27961680 (-)
LOC122360079 NA other downstream 33907 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 252944 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 615414 26993974 ~ 26998359 (-)
G116677 NA other downstream 657939 26954220 ~ 26955834 (-)
G116668 NA other downstream 737163 26874398 ~ 26876610 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other upstream 998 27622629 ~ 27627660 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 86085 27707716 ~ 27804770 (-)
G116868 NA other upstream 341857 27963488 ~ 27964958 (-)

Expression


Co-expression Network