si:ch73-86n18.1 (si:ch73-86n18.1,LOC107717455,LOC107700163,LOC107551672,LOC107723521,LOC107582056)


Basic Information

Item Value
gene id si:ch73-86n18.1
gene name si:ch73-86n18.1,LOC107717455,LOC107700163,LOC107551672,LOC107723521,LOC107582056
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14473014 ~ 14476471 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261506.1
GAGAAGTTCTTACAAGTCTGagcagaaacacaaaaacaacaggaAGAACTTTCTCCTCTCAATTTCTTCCAGGGAAGCTTTCTTTTGATTGCTCTCTTTCTCGTGGACTGTTATTTCTTTATTGGTGATCTGGAGGACAAGGCTAGAAGATAAAGACATCACTCTTGCGAGACAGAAGCTCTGTTGTTAAATAAAGAAGACAGATTTACTgaactttttgtttaaagatggAAGATATTGAAAATTACACCAGTTTACAAGAGTTCACAGAGGATATCTCTCATAGTGGAAACAGACCTATACTCACGTCGCAGGGCAAACAagGTGTTCACAAAGGGACGCAGTGTTTGAGGGGACAGACTTCTCTTGTACTGCTCATTGCTCTGCTGACCTCAGTTTGTGCAAACATAGTACTTGGCGTTCTCTTGGTAAACAGTCGCAGATCATCGGTCGCTGTACAGCCAGTCAAGAGTGATGAGCCTGAGTCTGAGCCTCTAACTCTCAAACTCACCGCCATGCAGGAGCGTTTCTCCCGCCTTTGCTCTGAATACACAACCCTTGGACAGACTTGTTCAAAACCGGTGATCAAATGTAGGCCATGCCCAGAAAACTGGCTGCATTTAGAGGAGAGGTGTTATTTCTTTAGTGATGATAAACTTGACTGGCAGCACAGTAAAGAGAGCTGCGCGTCTATGGGCGGCCATCTGACTATACTGCACAGCCATCAACAACATcaCACACTTGAGAGTGTTGCACGCAATCGTGGTGGACTCGACTATCATTACTGGATTGGTTTATCAGACATCGAGACTGAGGGAGTGTGGAAATGGGTGGACAATACGGTGGTTAATACAacGTTCTGGAGTGAATGGGATAAAGAGCCCAATAACCACCAGTCAGGTGGGATTCATGGAGAAGACTGCGCAGTGCTGGACTCACGGTCTAAAACATGGTTTGACGTGCCCTGTGATTTCAATTACAAACGAATATGCGAGATGGATCCCATCACCATTAAAGTTTGATGTGAagagaaaatgtataaaaatgtgtgtctatttttctattcttctttctttttaataaaagtgaaattcTCATCTTCGA

Function

symbol description
si:ch73-86n18.1 Predicted to enable carbohydrate binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CLEC4E (C-type lectin domain family 4 member E).

NR:

description
PREDICTED: C-type lectin domain family 4 member E-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261506.1 True 1104 mRNA 0.43 6 14473014 14476471

Neighbor

gene id symbol gene type direction distance location
cops7a cops7a,LOC107717457,LOC107700164,LOC107582055,LOC107671210 coding downstream 896 14464588 ~ 14472118 (-)
znf384b znf384,si:ch211-154o6.2,LOC107671195,LOC107582054,LOC107717452,LOC107700169 coding downstream 27351 14433256 ~ 14445663 (-)
gnl1 gnl1,LOC107717451,LOC107551674,LOC107700168,LOC107671206,LOC107723463,LOC107582120 coding downstream 40545 14424493 ~ 14432469 (-)
ddr1 LOC107551675,LOC107700170,LOC107671180,LOC107723396,LOC107582051 coding downstream 59693 14382802 ~ 14413321 (-)
tubb5 tubb,tubb5,LOC108432309,LOC107700172,LOC107717448 coding downstream 101589 14366214 ~ 14371425 (-)
LOC122360687 LOC107717454,LOC107700162,LOC107573687,LOC107723374 coding upstream 144 14476615 ~ 14483144 (-)
LOC122360168 NA coding upstream 29712 14506183 ~ 14508585 (-)
LOC122360167 NA coding upstream 34354 14510825 ~ 14515708 (-)
LOC122360169 NA coding upstream 41590 14518061 ~ 14524116 (-)
LOC122360164 NA coding upstream 50374 14526845 ~ 14533075 (-)
G112612 NA non-coding downstream 144811 14327952 ~ 14328203 (-)
G112483 NA non-coding downstream 169479 14303124 ~ 14303535 (-)
G112479 NA non-coding downstream 176442 14292739 ~ 14296572 (-)
G112474 NA non-coding downstream 262075 14210693 ~ 14210939 (-)
G112473 NA non-coding downstream 262481 14208396 ~ 14210533 (-)
G112659 NA non-coding upstream 114891 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding upstream 156743 14633214 ~ 14638332 (-)
G112686 NA non-coding upstream 238745 14715216 ~ 14715491 (-)
G113034 NA non-coding upstream 415569 14892040 ~ 14892395 (-)
G113039 NA non-coding upstream 470124 14946595 ~ 14947384 (-)
G112478 NA other downstream 171395 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 789105 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2094565 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 2605699 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 3061237 11410678 ~ 11411777 (-)
dicp3.3 NA other upstream 21792 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 106008 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 422711 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 432149 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 494070 14970541 ~ 15015462 (-)

Expression


Co-expression Network