LOC122360718 (jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487)


Basic Information

Item Value
gene id LOC122360718
gene name jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16070539 ~ 16103655 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261540.1
CTAGGTCGCGGTAACATCGGTGCCATTGAGTTCACACAATATGAGGGAGCACAGCGGCAGCCAAAACCCAACTCTAGATTTTTCAAATTGGTGCGTTTGACTGTTTTGCACCCGCATAATGTAACAATAAACGACACATTACAAGCTACGAGACTGGAAGCCAGGAgctggcttttattttgactgcaAGAATGTGGTGCGAGAGCTCTGACAATACGCCGTTTAGCTTTCAAATGGAAGATTGGCTACTCCGGCTCATTTCGGTGGATATGTTgccgttgttttttttacacagaccCTTTCTAATCGCCATGGATCTTCGGATTTGGATTCTTTTACCTCTGTGGTGTACTGAGCTGTAAAGAGAAGACGGGCTACGCCGATCGACCGGGATACGACGTTCTCTGCCTACCTCGACATTTTGCTACCAGGGATTTAAATAATCACGTGCTACAACAAcggaaagattttttttttaacaatcagAATTGATGTGGCCGTCTAACCTTTAATGAATTCAATCTGGAGGGCAAAATGAGTAGGGAAAGGCCGAAGAGAAATATCATTCAAAAGAAATTTGATGATAATGATGGGATCCCGTGGTCGGAGGAGAGAGTGGTCCGCCGGGTGCTCTACCTCTCACTTAAAGAGTTTAAGACGGCTCAGAAGAGCAAAGTGGAGAATGGCACTGGAATAGTTAACGGCTCCTTTACAAATGGACGTTTAAACGGTCCGGGAGCTAAAGCCGGGCTGTTTGCTGGAAGCTGTAAGTCGGACCGGACACAACATGCCGTTCAGAGCAAAGACTGCGGCCGTGAGTACTCAATGGAGGGGCCTGTCAGAAAGAGGCCGAGACTGCAGGCTCAGAGGAAGTTTGCTCAGTCTCATCCCTGCTCTCCCAATGCCACCCCGCTGAAAATGCTGGAGGCCACCCCGAGCCCAGCCATGCTCAACCATCTCACAAAACGCAAACCCAAAACAGAAGACTTCCTTACCTTCCTCTGCCTAAGAGGCTCTCCTGCGTTGCCCAGCAACATGGCATACTTTGGTAGTGCtaaagatgatgaagatgtcgatgaggaagaggatgaggaagaggaagaagacaGTGTTAGCAATGCCCCTGCTTTCTGCCAGTCTACTCCACGCAAGAGCAAAGGACCCAACAAATGCATCGCCAACGGTCATGTTTTTAATGGACAGACACGAGCTGCTGAGGAACACGAGAGCAGTTTAAGGGCCAGAGGGAGAGACGGGGTCCATGGGAAGGAGAAGAACTCTGTAGCATCAGCTAGGACCTCCACTACACACAATCTACGACCCAACAGGGCTGTACAAGAACAGAAACAACAGCCGTCCAAAATGAATGGAACATCAGGAGCATCCACTGTCAATTCTAGGAAGACGAGAGAACCCCGTAGTCCCCCGACCAAAGCTGTGAAATACCCCAAGGGCCACGTGACTTACACCAAAGCCAGACTGCTCAAAGAGGCCAAGCTCAgcctgagcacacacacacgccacacccacacacaccctCAGCACTCCAACTCAGGAAAAGCCCAAACCAGCCACGCCAAGATGCAAAAACAGGTGCTATCACCAGCAACTGCTGGGAGGCTGTGTGGGACGGACACTTTCCCACCCAGGAGAAACGGACTGAGACAGTCAAAGAGGCAGTTGGAGTTAGCCGGGGATAGTCTGACCGGAACAGAGGTCGAGGTCAAGAGGGTCAAAGTGCAAGTGGTTCCCTTAGGGACACGGAGTAGGAAAGCAGCTCAGGAGACCCCGGTGAGATCACAAGTGGCAGGATCGCAACGGCCCAAACGGGCTTCGGCGGGGAAGCTCATGTTCACCAAACAGATGCACTGTAAAGCCACCGTTCTGGCCAAGAACAGCCCCACTACCTCAACACGAGACATTTTGAAGCCAGCCAACTCCCCCAAAATATCAGAGACCCCCAAAACAAGCAATTCTCTAAAGCAAGGCAATCCTTCTAATACGACTGAGCCCGTCAACCAAGCTGAGCCTAAAGAACGCGGCCGGCGCAGCGCGGAGGTCACGGAGGTTCCCGTTTTCTATCCCAGCACACGCGACTTTCACGACCCGATGACTTACATGGAGGTTGTGCGGGGGCAAGCCGAGGCGTATGGGTTGTACCGGGTTGTTCCGCCAGCGGATTGGCGTCCTGAGTGTAAGCTTAAAGAGGAGATGCGCTTTGTCTCGTACGTGCAGCATGTGCACAAGCTGGGCAGACGCTGGGGCCCGAATGTACAGCAACTGGCCTGCATCAGGAGACACCTGCGCACACAGGGCATTAACATGGAAGAGCCTCCACTTATAGGCGGCTGTGAACTGGACCTGGCCAGATTCTTCCAGATCCTCAATGAAATGGGGGGCATGCAGCAGGTGACAGACCTGAAGACGTGGGGCCGTCTCGCCGATCTGCTGGGCATCCCACGCTCGGCTCAAGACCGGCTGGCCAAGCTCCAGGAGGCGTATTGCCAGTACCTGCTCTCCTACGACTCCCTGTCCCCGGCCCAGAGGGCCCAGCTGGAGAAGGAAGTGCTGGCAGAGAAAGAGGCCCTGGAGAGAAGAAGTGGGCCCCTAGAGGGCCAGGGAGACATATCCCAGCATGCCGCTCTGCTGCTTCCACGCTGCGAGCCCAAAAATGGACTGGTGAACGGAGCGTTGCACCGGAGCGGAGCTCGCGAGCACCTCAGAGAGCTGGACCCCACGGCGAAGACCACCCGGCCGAGAAGACTAGAGAAGAGAGGGGAGGATGAAGGGGTGATAAATGAACATCACAAGTGCATACACAGGGGAAAGTCGTTCTCGCTGACGACGTTCTACAGGGCAGCCAGAAACACTATGAACATGTGCTTCAGCAAAGAGCCAGACACCGCTGAAGTTGAGAGGGAGTACTGGAGACTGGTTGATGAAAAGGAATGCCATGTTGCTGTGCACTGTGGGAGGGTTGACACAAAGACTCATGGGAGTGGATTTCCTGTGGGAAAGTCTGAGCCATTTTCAAAGCATGGATGGAATCTTACTGTCCTTCCCAATAACTCAGGATCCATCTTACGTCATCTTGGTGCTGTGCCAGGAGTGACCATCCCCTGGCTGAACATAGGCATGGTCTTTTCTACCTCATGCTGGTGTCGGGACCAGAACAGCCTTCCGTATATAGATTACCTACACACTGGTGCTGACTGCGTTTGGTACTGTATTCCAGCTGAAGAGAAATCAAAACTTGACAAAGTAGTACACACACTGCTACAGGCGAACGGCACTCCAGGGCTGGAGATGCTAGAGAGGAACATTATGATTTCTCCAGAGGTGCTCCGTCGAAAGGGGGTGAAAGTGTACCGGACTGTGCAACAGAGTGGGCAGTTCATGGTATGTTTCCCAGGGACCTTTGTGTCTAAGGTGTGTTGTGGCTACAGTGTCTCAGAGACAGTGCACTTCGCCAACCCCCAGTGGATGAAACTGGGCTACGAGGCAGCTAAGGACCTTAAACGGCGTCGTATAGAGGAGCCTTTCTCCACGGAGAAACTGCTCTACCAGATCACTACATGTGAGCGGGACAACAAGCAGCTCATGAATGCAGTCTCCAGTCTCATCAGAGATCTCAGGGATGCAGAGATTAGCGAGCGCAGGGATCTGTTCGAGGCCGGGCTCCGTCTGTCCGCACGCTACGGCACACACTGCGAGGCTCAAGCTGACAAGAAGAAGCAGCAGCGCTTGAGATTTACAGAAGACACGGCTGACAGACGCTGCCAAGTGTGTCAGCATCTGTGTTACCTCTCCATGGTTGTTCATGAGAGTGACAATGTGGTTTTCTGTCTGGAATGCGCTCTGCGATACATCCAGAAGCGCAGGTCCCCCCGAGGCCTCAAGATGATGTTTCGTTACACCGAGGAGCAGATCAACGGTCTGGTGAGTCGAGTGTGCGGGAGAGCGCTGGAGAAGGGCGGCGTGAAGCAGAGAGCCGTCGGCCCCAGCAAGACACCAGCAAAACGAAGCCCCAGAAACTCTCTCCAGCACCACCTCAAAGAACACCGGCCGCTCCTAACCAGACCAGAGCGTCAGCGACATTCCTCCGGGTCTCCTTTTATATCAGGTGTTCCTAATACTTGTGTACAAACACTCTTCAATACTCTTTGTACCTagtgtataaatatatcaatacaaCAAGCTGTTATATTGCACTTTTGTATTACAGATACGTGTAGTTACTGGCTGGTTAGTCCAATATATTGAATGTACGGAGGTTAAATGTTACATCGCATTTCACGTCAAATATAAGGGGGCGAATACACAATTGTTTGGGGCACCTGACGTAAGGCTAT

Function

symbol description
jarid2a Predicted to enable histone demethylase activity. Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).

NR:

description
PREDICTED: protein Jumonji-like

GO: NA

KEGG:

id description
K11478 JARID2, JMJ; protein Jumonji

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261540.1 True 4352 mRNA 0.52 20 16070539 16103655

Neighbor

gene id symbol gene type direction distance location
rbfa LOC107699468,LOC107715083,LOC107596252 coding downstream 69891 15998312 ~ 16000648 (-)
prelid3a prelid3a,LOC107715058,LOC107723525 coding downstream 106831 15959669 ~ 15963708 (-)
lratd2b zgc:110182,LOC107715046,LOC107699471,LOC107723393,LOC107593723,LOC107595500,LOC107657619 coding downstream 131649 15936647 ~ 15938890 (-)
prss1 try,LOC107714673,LOC107699515,LOC107595397,LOC107657672,LOC107723506,LOC107593633 coding downstream 201328 15867304 ~ 15869211 (-)
has1 has1,LOC107714739,LOC107723422,LOC107657615,LOC107699477 coding downstream 265837 15799086 ~ 15804702 (-)
LOC122361095 LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647 coding upstream 45308 16148963 ~ 16152079 (-)
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding upstream 48849 16152504 ~ 16154388 (-)
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding upstream 94064 16197719 ~ 16210633 (-)
zgc:110410 zgc:110410,LOC107723576,LOC107657623,LOC107593651 coding upstream 136299 16239954 ~ 16243472 (-)
derl1 derl1,LOC107593655,LOC107657695,LOC107714924,LOC107736822,LOC107699495,LOC107595682 coding upstream 152827 16256482 ~ 16264542 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding downstream 2994 16066166 ~ 16067545 (-)
LOC122360541 NA non-coding downstream 84355 15984741 ~ 15986184 (-)
G113244 LOC107715075,LOC107699469,LOC107595516,LOC107723556,LOC107593640,LOC107657683 non-coding downstream 103346 15964758 ~ 15967193 (-)
G113234 NA non-coding downstream 111875 15929222 ~ 15958664 (-)
G113236 klhl38b,LOC107723565,LOC107657680,LOC107593636 non-coding downstream 123856 15911312 ~ 15946683 (-)
G113281 NA non-coding upstream 16671 16120326 ~ 16196677 (-)
G113300 NA non-coding upstream 87207 16190862 ~ 16192689 (-)
G113280 jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576 non-coding upstream 90374 16194029 ~ 16195896 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding upstream 248615 16352270 ~ 16357623 (-)
LOC122360769 NA non-coding upstream 384463 16488118 ~ 16494739 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 56788 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 64068 16001313 ~ 16006471 (-)
G113220 LOC107714743,LOC107699517,LOC107595378,LOC107657670,LOC107593630,LOC107723558 other downstream 208646 15857599 ~ 15861893 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other downstream 251453 15816979 ~ 15819086 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other downstream 398388 15659752 ~ 15672151 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other upstream 35664 16139319 ~ 16141235 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other upstream 115006 16218661 ~ 16228466 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other upstream 129317 16232972 ~ 16239506 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other upstream 482429 16586084 ~ 16682178 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1708715 17812370 ~ 17830977 (-)

Expression


Co-expression Network