LOC122360733 (ubqln4,LOC107756885,LOC107726678)


Basic Information

Item Value
gene id LOC122360733
gene name ubqln4,LOC107756885,LOC107726678
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27631766 ~ 27637531 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261566.1
GTAAAAGAAGAGTAAAGATGGCGGAGAATAGCGGCACGGATCCTGCCGTGGAGACGAACACTGAGGAAAATGCCGCCGCTAGCGCGACTATCATTAAGGTCACCGTCAAAACACCGAAGGATAAAGAAGAAATAGCCATCGCCGAGGATTCATCTGTCGCACAGTTTAAAGAGGAAATCTCCAAAAGATTTAAGGCGAAGCAGGACCAGTTGGTTCTGATATTCGCCGGTAAGATCCTGAAAGACGGAGATACGCTTGGCCAGCATGGCATTAAAGACGGACTCACGGTTCACCTGGTCATCAAAACCGCACAAAAGACTTCAGGTGGTGGTAGTTCGCAGACTTCTGCCTCTTCTGGCCCTGGACCATCGCAGGGCAACACTGCTGGAACCGCTAACTCCAGCCCACCCGGCAACCTGGGCACACCCCAGGGAACTGGGCCATCCCCAACCCCAACACAGCCACCCAATATACTAGctgGGTTTGGTGACCTGTCAGGCCTGGCTAACCTCGGCATGGGGTCCGCCAACTTCATGGAGCTTCAGCAGCAGATGCAGCGACAGCTCATGTCCAACCCTGAGATGCTGTCTCAGATCATGGAGAACCCGCTTGTGCAGAGCATGATGTCCAACCCTGACCTGATGAGGCAAATGATAGTGGCTAACCCACAGATGCAGCAACTGATGGAGCGCAACCCGGAGATTTCACACATGCTTAACAACCCAGAACTCATGAGACAGACAATGGAGTTGGCACGAAACCCAGCCATGATGCAAGAGATGATGCGTAACCAGGACAGGGCGCTTAGCAACCTTGAGAGTATTCCCGGGGGTTACAATGCTCTTCGGAGGATGTACACCGATATTCAAGAGCCCATGTTTAGTGCTGCACGTGAACAGTTTGGAAATAACCCCTTCTCGGCATTGGGTGGAAATGCTGATAACTCCGGAACACCGCCTTCCAGGACAGAAAACCGAGAGCCTCTGCCAAATCCCTGGGGGCCCCCTGACACCGCTGCCGCCACCACCACTGGGACAGCTAccaccaccagctccaccaCAAGCTCAACCACACCCAGTGTGTCCAACCCACTGGGCATCAGCTCCCCTAGCCTTGGAAACGGTATGTTCAACAGTCCTGGCATGCAAAGCTTAATGCAACAGATCTCTGAGAACCCTCAGCTTATGCAGAACATGCTTTCTGCTCCTTATATGCGCACCATGATGCAGTCCCTGGCCCAGAATCCTGATATTGCCTCACAGGTGTTGATGAACAACCCTCTCTTTGCCGGAAATCCACAGCTGCAAGAGCAAATGAGACAGCAGTTACCTGTATTTCTACAGCAGATGCAGAACCCAGAAGCCCTTTCTGTTATGACAAATCCTCGAGCCATGCGAGCCCTAATGCAGATCCAGGAGGGACTGCAAACCCTTCAAACCGAAGCCCCTGGCCTCATGCCCGGTCTGATACCTGGTGGCATGGCTGCTGGTATCCCTGGTGCCCCACTGCCCACAGGGGTGAACGTGACCCCCGAGAACCCTCCGCCCAAGCCAGGGCCCGCCCCTGTCCCCACCCCAGCCCCAACCCCCGCTGCTGGAACAAACACTGCCCAGCAGCAGCTCATGCAACAGATGCTACAGATGTTTGCTGGAGGGAATGCATcgACTCAGACTCCGGAAGTGCGTTTCCAGCAACAGCTGGAGCAGCTGAGTGCCATGGGCTTCATCAACAGGGAAGCCAACCTTCAGGCCCTTATCGCCACCGGGGGCGACATCAATGCCGCCATCGAAAGACTGCTCGGCTCTCAGCCTTCCTAATTCCATCAACTGAGAGCGTGCGAAGGGAGACAAGAAGCAAACATAGTCCTCATCACATAAAATCTGACGAGCCCCAAATAGACAGGATTCCAATTactcaatcttttttttttttttttttttttttctattttttttctatttttttttttttttttttttttttttttttttttttttggcttcgaTCAGTCAGTCTCTGAATCAAAAAGAAATGAGGgtttcaaatttgaaaaaaaccaaaccaaccaGAATCTCTGTGGAATGACATCACACTAACCCCTCATCACTAGTAAGATGGGACAAAGCTTACATTTGCTTGAACCAAGTTTGAGTTACCATTCCTTACAATTAGAACACACTCACCTGAGGCACTACTCAGTGGTTAGGGGAATAAAATCCATACGCTTGAATTCCGAGGCCCAGGGGGATTCTTGTCTTCTGTGAAAATGCTTGGTTTCCttaatttctctctttctcctaaTTCATGCCTGATCAAACCAGTATTTATTGCAGAAACGTAGAGCTTTCCCTTTACTCCCTTTCCGCCCTCTTCAGTTGACGTTGATTTTGAGCGTTCCTTGACATTTTGATGTGTTAATCGAAATCTAATAGACATGATCATGTTGGAGCACTATAACACCTTGACTCTGATCGCTTACACTTCAGCTATTTTAGAAAGGAATGAGTTTTGGAGATGAGGTTTGGAAAAGATATTCGGTCATCTCTTTAGTCGTTTGCCTTTGTGAGGAGTGTACATGAATTGACAGTAAAGGCTTGTCATATGGGTAAGGTTGTAACAAAgcatcaataaaatatttctcagCTTAA

Function

symbol description
ubqln4 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Is expressed in muscle and trunk. Orthologous to human UBQLN4 (ubiquilin 4).

NR:

description
PREDICTED: ubiquilin-4-like

GO: NA

KEGG:

id description
K04523 UBQLN, DSK2; ubiquilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261566.1 True 2648 mRNA 0.49 12 27631766 27637531

Neighbor

gene id symbol gene type direction distance location
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding downstream 1492 27628557 ~ 27630274 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding downstream 10135 27613773 ~ 27621631 (-)
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding downstream 72794 27538393 ~ 27558972 (-)
si:ch211-269k10.4 NA coding downstream 249977 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 373756 27242882 ~ 27258010 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 47736 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 52909 27690440 ~ 27693938 (-)
tmem176l.4 NA coding upstream 259197 27896728 ~ 27900760 (-)
mex3a mex3a,LOC107592477,LOC107688221,LOC107592188,LOC107756899,LOC106605309 coding upstream 295543 27933074 ~ 27939751 (-)
zmp:0000000881 LOC107756898,LOC107688220,LOC107592478,LOC107726696,LOC107671483,LOC107592126 coding upstream 328911 27966442 ~ 27971009 (-)
G116814 NA non-coding downstream 19266 27612068 ~ 27612500 (-)
G116812 NA non-coding downstream 22801 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 39740 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 142087 27378560 ~ 27489679 (-)
G116833 NA non-coding upstream 38457 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 63595 27701126 ~ 27704934 (-)
G116835 NA non-coding upstream 69075 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 315037 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 323100 27960631 ~ 27961680 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other downstream 4106 27622629 ~ 27627660 (-)
LOC122360079 NA other downstream 51900 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 270937 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 633407 26993974 ~ 26998359 (-)
G116677 NA other downstream 675932 26954220 ~ 26955834 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 70185 27707716 ~ 27804770 (-)
G116868 NA other upstream 325957 27963488 ~ 27964958 (-)

Expression


Co-expression Network