ccdc127a (ccdc127a,LOC107686768,LOC107719164,LOC107556965,LOC107592531)


Basic Information

Item Value
gene id ccdc127a
gene name ccdc127a,LOC107686768,LOC107719164,LOC107556965,LOC107592531
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20036348 ~ 20039187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261589.1
gCCCAACTCCCCTATTAAATAGTAAATTGACCGCTGGATGTTTTTAATGGAATTGCACGTTCAAGCTGCCTGGAAGATCTCCTGCAAAAGACTTTATATTGTTCAAGGGTTTCTCCATGAACAACCTGAACGATCCTCCTCGATGGAACATTAGACCGGAGGCCGCTGGAGGAGAAGACGGGGGCAGATGGAACTACGCGCTGCTGGTGCCCATGATCGGGCTCGCGGCGTTTCGTTGGATATGGACTCGAGAATCACAGAGCCAGATCCAAGATGTGAAGAGCAAGTACGACAGGGATATGGCAGCCATTACCAGAGACCTGGAGCTGAAGTACAGGGAGACGCTGACGGAAAACCGGCGGACAGCAGCACACCTGGAGGTGGAGCTTGAGAAGGAGCGCCAACGTGTGCAGGGCTACAAGAAAGCCCTGATCTCTCAGAGTCAGCAGCTCATGGAGGAACGGAAGCAGCTTCATCAGGAACGGCAGGATCTGGAGGAAGAGAAGACCCGTCTGCTGCGGTCTGGAGTGGCCGAGGCGGTGCTGAGGAAAGCCCTGCAGCGAGAGGAGGACTGGCGTCGCAGGGCTCAGGCTCTGCTGCAGGAACTGGAGGTGAAGCTGGTGGAGAGGCAGGAAGCTTTCTGCAGCATCCTGTTGCCACGAGAACATCGTCTGGAGATGGAGAAGAACCTGCTGCTAAAGGTGGCTAAAGACCCGGCGGGTGCCGAGCTGAACCTAGAGGAAGATCTCAGGGACATTTTTAAGAATGACAGACACTGTGCAGATTTGCTGAACATGGATAAGCGTAAGAATGGGAGTTTGATGTGGCTGTACCTCAGGTACTGGCAGCTCCAGGTCACCCTGCAGAAACACAAGAGGGCAGAAGAGGCTCTGAAAGGGGCCTCGCCAAACTCCAGCAGACCTTCAGGAGTGTAGATctctatttaaaacaataagtaTTTTCTTCCTTAAATGTTGTCCTTTGCTTATCCAAGGTATCCCTGTTATTTACTTGTCAGCTATTTATGATGCCAAATGTTCTTGTGAAACCACTTGAGCCTTGAGTCTTCGACAATCATATCAGAACATAAGAGTGTATATTTTGTTGGGCAGATTCCGGTTTTCGTTTTCTTGGATTAAGCAGAAAGCAGATAAATCaaattcttttttatatttgctgcaTTACTAATAAGCTTTATtggacaatttatttattttcactctaAAGATGGTTCATAACTAATATGTACcacagaaagtaaaaataaggTTGGACATGTGTAATAAATACGTTTTCTGACAACAAAGAATATA

Function

symbol description
ccdc127a Orthologous to human CCDC127 (coiled-coil domain containing 127).

NR:

description
coiled-coil domain-containing protein 127-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261589.1 True 1313 mRNA 0.48 3 20036348 20039187

Neighbor

gene id symbol gene type direction distance location
rnf144b rnf144b,LOC107592436,LOC107686312,LOC107556966,LOC107714339 coding downstream 9343 20022244 ~ 20027005 (-)
sqlea sqlea,sqle,LOC107666801,LOC107556968,LOC107714342,LOC107686341,LOC107592438 coding downstream 16116 20011295 ~ 20020232 (-)
si:dkey-122a22.2 si:dkey-122a22.2,LOC107719144,LOC107666836,LOC107592440,LOC107686774,LOC107556959 coding downstream 149685 19865726 ~ 19886663 (-)
zgc:101716 zgc:101716,LOC107686482,LOC107556972,LOC107728463,LOC107709702,LOC107666748,LOC107592507 coding downstream 545615 19487757 ~ 19490733 (-)
upk1a upk1a,LOC107728482,LOC107666813,LOC107592444,LOC107686548,LOC107709649 coding downstream 556874 19475818 ~ 19479474 (-)
mrpl32 mrpl32,LOC107592435,LOC107666771,LOC107686307,LOC107714338,LOC107735708,LOC107580730 coding upstream 760 20039947 ~ 20041361 (-)
adam22 adam22,LOC107719137,LOC107714333,LOC107666740 coding upstream 37620 20076807 ~ 20127963 (-)
dbf4 LOC107666861,LOC107719134,LOC107592429,LOC107686229,LOC107714332,LOC107592324 coding upstream 89856 20129043 ~ 20133941 (-)
rundc3b rundc3b,LOC107666772,LOC107686653,LOC107719153 coding upstream 100225 20139412 ~ 20154648 (-)
polr3glb polr3gl,polr3glb,LOC107666760,LOC107714326,LOC107592290,LOC107686116 coding upstream 199945 20239132 ~ 20243565 (-)
G114626 LOC107714343,LOC107666800,LOC107592439,LOC107719142 non-coding downstream 64391 19959867 ~ 19971957 (-)
G114611 NA non-coding downstream 316412 19719186 ~ 19719936 (-)
G114608 NA non-coding downstream 342955 19693138 ~ 19693393 (-)
G114607 NA non-coding downstream 352418 19683622 ~ 19683930 (-)
G114550 rims2,LOC107592505,LOC107728483,LOC107709709 non-coding downstream 417271 19609105 ~ 19619077 (-)
G114663 cldn12,LOC107682396,LOC107686255 non-coding upstream 61857 20101044 ~ 20104270 (-)
G114718 NA non-coding upstream 134976 20174163 ~ 20244153 (-)
G114741 NA non-coding upstream 176916 20216103 ~ 20217581 (-)
G114747 NA non-coding upstream 205834 20245021 ~ 20245239 (-)
G114768 NA non-coding upstream 263796 20302983 ~ 20305444 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other downstream 378624 19596432 ~ 19657724 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other downstream 615254 19416962 ~ 19421094 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 1215238 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 1337941 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 1365074 18669607 ~ 18671274 (-)
G114715 NA other upstream 127608 20166795 ~ 20177758 (-)
G114793 NA other upstream 402778 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 596938 20636125 ~ 20650937 (-)
G114901 NA other upstream 612790 20651977 ~ 20653574 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other upstream 973420 21012607 ~ 21017105 (-)

Expression


Co-expression Network