zgc:113232 (zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324)


Basic Information

Item Value
gene id zgc:113232
gene name zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22335163 ~ 22344100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261611.1
CATGTATGAAGGCTCATTAGTCGATCGATATGATGAGCAATCTGGATACACTCACAGTGTCGAGTATCCTGCAGAGTCCAAACGTGGCAGTGAAGATGAACACTCAGCATCCGGCTTTGACCCCTATGCGCCTGCAGCCACCGTGGTCACCATGATCACTGAGGAAACTTATCCGTACAACACACCCGTGGAGTCTTTTGATTATGCCAAAGAGGATAAAACCTTGATAACACAGGTCCCCTATGGAGGGGATGCTGAGCTGGGACAGGAGGGACCGACTGAATGTGACTGTGAAGCAGGAGAGCCTGGATTTGGAGGCTTTGCTGGACCTAAGGGTTCTAAGGGTCTTCACGGCAAACACGGGTTTCCTGGGGTTCAAGGAAGGGAGGGTTACAAAGGAACCAAAGGagtgagaggaagaggaggagacaCCGGTCCTGAGGGCGACTCTGGGCCTGATGGAGAGGATGGAGCATCTGGTTTCTCTGGTGCAATTGGCTTTCACGGGTTACCAGGGGACCCTGGTGAAACTGGCCAAGCTGGATCAAAGGGTGATGTTGGAATCGAAGGTCCGCGTGGAGGAGTGGGTGTTCCTGGAAAGACTGGTTCTGCTGGTGCAAAAGGTAAACCTGGAAAACAAGGCGGTAAAGGTACTAAGGGTTCCATTGGCAAAACAGGAAAACAAGGTCATGAAGGAAAACAAGGACAGAAGGGTCAGACAGGAGCACCTGGATTCACAGGAGACCGTGGAGAGCAGGGTTACTTGGGTTATACAGGAGTGCCAGGAGGCCGTGGGGTGACGGGACCGAAGGGTTCCAAAGGTGCAGGTGGCTTGCCAGGAAGTGATGGCGAGCCAGGCGAGGATggACCTCTGGGTGTTCCGGGAGTTGAAGGGGTGCCTGGAACTTTTGGACctaagGGTTTGAAAGGTGATCGTGGTGAAAGGGGGCGACAAGGAAGAGTAGGAACTGTGggTCCACAAGGAGACAGCGGGGATGCAGGGGTTCCGGGGAAACCTGGACCAAAAGGCTTACCTGGGCCAACAGGTGCCAAAGGAGAAACAGGATCAGATGGTGAAAAGGGTGCAATAGGGCGCAAAGGAGGGAAGGGTTTTAAAGGAGATAAGGGAGGCGCTGGATCTCGTGGTGACAAAGGACAGCAAGGGGTTAAGGGTCGTTTCGGTCGTGATGGGCTTCCTGGTCCTATTGGACCTCCAGGTCTTCCAGGTCCCAGAGGTGACAAAGGCCCTATAGGAGACCAGGGAGGGAAAGGACAGAGTGGGCCTAAAGGGGAACCAGGTGAACCTGGTCCAGGACTGACGGATGAGCAGATATTGCAGCTGTGTCAAGGTGTGGTCACTGCTCAGATCTCCCAGTATGCTTCATCTATCCGTGCCAAATGCGTACAGGGCTGTCCAATCAACAACCGTACCCTCATCGGCCCCCCAGGAGTCACAGGACCCCCTGGAAGTTCGGGCAAACCTGGTAAAGCAGGAAAAGTAGGTGCTAAAGGAGAAAGAGGCCCTCAAGGAATGAAAGGTTTAGAGGGCCAGAAAGGAGCTACAGGGGACAAAGgtcCTAAAGGTCAGAAAGGACAGAGCGGTGATTCTGGAAAAGGTCTTCCAGGGCATGACGGTCACCAAGGCCCCAGAGGGCTGCCAGGCCATTCAGCAGAACCAAAAGATGGAATCGATGGGCCGCGAGGACCCCGCGGTTTTCCCGGGCCTGTGGGTCAGCCTGGCATGCTTGGCGATGCAGGAATACCCGGCGTGTGTGAGGCACGAGACTGCAGCATTCACGCGCCTGTAATGCGCAAAGAAATGGGATTGGTCAAAGGCCCTCTCGGTCAGGCCTGACAACAGGGACGAATGTGAGTGAGCCGCGACAGGAGATCATCTCCAGCAGAGACCATGAAAAAAAGTGCTGTCAGATGGAAGACATCACATACAGACAGACTGGAGCCAAGAACTGGAAATCAAATCACTACAGATTTGTCCAACAGTGAAACTAAACAATCGAAAACTACCAGCACTTTTGGTTTCATTCTTCAACAATGTTTTAGTTTCATTATTAATACAGTACagacatgtaaataattttgtaaagcatcttaaatatacatactgtgtcctgaaatattatgttttattgtcttGTTTCAAGCTGAATTAAAGATCATTTTTTGTAAACGTGTTAAGCCGTGTTTTATTGTGTGGCATGAATATAGTGTAAATACAAAATTGCTTGTCATTGTTCAGGAAATCAtagcattttgaataaaatccgtttaggaaaaaaaaaatctgaataaattatgaaaggCAGAACTAATTTGTTTATGACAGGGAAATATTAATgtcaataaatgtaatcattatAGTGTAGTGtaccaaaaaa

Function

symbol description
zgc:113232 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be part of collagen type IX trimer. Predicted to be active in basement membrane and extracellular space.

NR:

description
PREDICTED: collagen alpha-1(I) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261611.1 True 2396 mRNA 0.50 23 22335163 22344100

Neighbor

gene id symbol gene type direction distance location
cd83 cd83,LOC107705228,LOC107666866 coding downstream 3129 22330179 ~ 22332034 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding downstream 126559 22179651 ~ 22208604 (-)
trhra trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802 coding downstream 205654 22124696 ~ 22129509 (-)
sybu LOC107666828,LOC107713821,LOC107705165,LOC107551189,LOC107679650 coding downstream 334107 21991274 ~ 22001056 (-)
zdhhc3a zdhhc3a,zdhhc3,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding downstream 352360 21972672 ~ 21982803 (-)
snrnp48 LOC107679653,LOC107551179,LOC107756216,LOC107600666 coding upstream 3550 22347650 ~ 22351043 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding upstream 75770 22419870 ~ 22523750 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding upstream 419104 22763204 ~ 22767288 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding upstream 435135 22779235 ~ 22797020 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding upstream 468469 22812569 ~ 22815095 (-)
G115262 NA non-coding downstream 98097 22230240 ~ 22237066 (-)
G115170 NA non-coding downstream 461112 21873826 ~ 21874051 (-)
G115155 NA non-coding downstream 509726 21825198 ~ 21825437 (-)
G115098 NA non-coding downstream 946016 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 1003805 21331012 ~ 21331358 (-)
G115335 NA non-coding upstream 339327 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 429666 22773766 ~ 22774032 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding upstream 541615 22885715 ~ 22888001 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 566779 22910879 ~ 22911323 (-)
G115559 pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC107556080,LOC108437351 non-coding upstream 614584 22958684 ~ 22960933 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 246071 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 366628 21964855 ~ 21968535 (-)
G115149 NA other downstream 531359 21801475 ~ 21803804 (-)
G115141 NA other downstream 630204 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 720960 21605958 ~ 21614203 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 548002 22892102 ~ 22901187 (-)
G115554 NA other upstream 588527 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 1175708 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 1238893 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 1323965 23668065 ~ 23675345 (-)

Expression


Co-expression Network