dap3 (dap3,LOC107685621,LOC107743192,LOC107707170,LOC107598433,LOC107673026)


Basic Information

Item Value
gene id dap3
gene name dap3,LOC107685621,LOC107743192,LOC107707170,LOC107598433,LOC107673026
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13061035 ~ 13066879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261646.1
CGTAACTTCCGACGTCTTTCGGAACAATGATGGCGACCTCCATCGGCCGTGGCCCGTGACAGTACGACCGTTCACGTCAACCCGCTATCCGTAGTTATCGAGTTGTATATAACTCCTGattgacattttgttttcttcgcTTTTGTCTTTTATCCCAGAGAACATGAATCTGCACAAACTGTCCTCTCGACTGTGCCCTACAGTAACACAGAAGTTCAGGCATCTCCACATCCAAAGCAGCGGCCAGCAGGCAGTTGCTGTGGAAACGCAGTCAGTTGAATCAAATCCTCTGTCAGTCTTCAGAACCCCAGAGCAGGATCCAACGTACCATTCAGAAAGACATACTGGGCAGTACTACACGCTCCCAACGGCTCACATCCAAAAACTTTTCCCTCATGGACTGCCTCCACGCTTCCAATTACAGATTAAAACGTTTAATGAAGGCTGCGTGATGGTGAGGCCGCCGGCGCTGGAGCTCATCTCATATCTTAAAAAGGCTGATTACAGCAAGCCTCCGCTGCGTTATATGCTCTATGGAGATCTAGGCACTGGAAAGACCATGTGTTTGAGTCATGCCCTGCACTACTGCTACACTCAGGGCTGGCTGATCGTACACGTCCCCGATGCTCATCTGTGGGTCAAGAACTGTAAAGAGCTGCTACCATCGTCTTCCCGTCCTTCACGCTTTGACCAGCCAATCCAGGCATCCCAATGGCTGAAGAACTTCAAAATCACCAATGAACGCTTTTTATCCAAGATAAAGACAACACAGCGGTATGTATGGACAAAGAGAGAAAGTACTGAAAAGGGGCAGCCTTTAGGGGAGCTTGTTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTGGGTGCAGTGCTGCGAGAGCTGAGGCTGCAGGCAGGGGGCGCCACCGAGGGAGAGGGGGCCTTCAAACTGGCCGTGGCTGTCGACGGATTAAATGCTCTGTGGGGCAAAACATCTCTTAAAAAGGAGGATAAAACTACGTGTGAGCCCACGGAACTGACTTTGATTCATAATCTGAGGAAGATGGTGAAAAACAACTggACTGGAGGTGCCATTCTCACAGCTTTGTCTCAGACCGGCTCTCTGTTCCAGCCACGGTCTGCTTACCTTCCTGAAGAGCTACTAGGAGAGGAGGGGTTTGAAAATATGGATCCTTTCGTGCCCATTTCTGTGTCTGACTACAATGAGAAGGAGTTTGAGAGCTGTTATCTTTACTATTTAGACCGCAACTGGCTGCAGCATCAACACAGTCGATctgaagaaggaaagaaagagctTCTCTTTCTCAGCAACAAAAACCCATCCATCCTGGAACGATTGTGTGCTTTCTTGTAAGGCACATTTGGCTACTCTTGCTCTCTGTAtatcataaaaattaaatgtataagcTTGCAgcttttttcataataaaataattttgaaaaacgtGGAAAA
>XM_043261647.1
CGTAACTTCCGACGTCTTTCGGAACAATGATGGCGACCTCCATCGGCCGTGGCCCGTGACAGTACGACCGTTCACGTCAACCCGCTATCCGTAGTTATCGAGTTGTATATAACTCCTGattgacattttgttttcttcgcTTTTGTCTTTTATCCCAGAGTTTCAGAACATGAATCTGCACAAACTGTCCTCTCGACTGTGCCCTACAGTAACACAGAAGTTCAGGCATCTCCACATCCAAAGCAGCGGCCAGCAGGCAGTTGCTGTGGAAACGCAGTCAGTTGAATCAAATCCTCTGTCAGTCTTCAGAACCCCAGAGCAGGATCCAACGTACCATTCAGAAAGACATACTGGGCAGTACTACACGCTCCCAACGGCTCACATCCAAAAACTTTTCCCTCATGGACTGCCTCCACGCTTCCAATTACAGATTAAAACGTTTAATGAAGGCTGCGTGATGGTGAGGCCGCCGGCGCTGGAGCTCATCTCATATCTTAAAAAGGCTGATTACAGCAAGCCTCCGCTGCGTTATATGCTCTATGGAGATCTAGGCACTGGAAAGACCATGTGTTTGAGTCATGCCCTGCACTACTGCTACACTCAGGGCTGGCTGATCGTACACGTCCCCGATGCTCATCTGTGGGTCAAGAACTGTAAAGAGCTGCTACCATCGTCTTCCCGTCCTTCACGCTTTGACCAGCCAATCCAGGCATCCCAATGGCTGAAGAACTTCAAAATCACCAATGAACGCTTTTTATCCAAGATAAAGACAACACAGCGGTATGTATGGACAAAGAGAGAAAGTACTGAAAAGGGGCAGCCTTTAGGGGAGCTTGTTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTGGGTGCAGTGCTGCGAGAGCTGAGGCTGCAGGCAGGGGGCGCCACCGAGGGAGAGGGGGCCTTCAAACTGGCCGTGGCTGTCGACGGATTAAATGCTCTGTGGGGCAAAACATCTCTTAAAAAGGAGGATAAAACTACGTGTGAGCCCACGGAACTGACTTTGATTCATAATCTGAGGAAGATGGTGAAAAACAACTggACTGGAGGTGCCATTCTCACAGCTTTGTCTCAGACCGGCTCTCTGTTCCAGCCACGGTCTGCTTACCTTCCTGAAGAGCTACTAGGAGAGGAGGGGTTTGAAAATATGGATCCTTTCGTGCCCATTTCTGTGTCTGACTACAATGAGAAGGAGTTTGAGAGCTGTTATCTTTACTATTTAGACCGCAACTGGCTGCAGCATCAACACAGTCGATctgaagaaggaaagaaagagctTCTCTTTCTCAGCAACAAAAACCCATCCATCCTGGAACGATTGTGTGCTTTCTTGTAAGGCACATTTGGCTACTCTTGCTCTCTGTAtatcataaaaattaaatgtataagcTTGCAgcttttttcataataaaataattttgaaaaacgtGGAAAA
>XM_043261648.1
tgagccaaaaatgaGCTCTGGAGCTGGATTTCAGTGGACGTCGTTTACCTGCTGCGTCGAGGCGGCCATCTTTGCTCTTAAACAACATGAATCTGCACAAACTGTCCTCTCGACTGTGCCCTACAGTAACACAGAAGTTCAGGCATCTCCACATCCAAAGCAGCGGCCAGCAGGCAGTTGCTGTGGAAACGCAGTCAGTTGAATCAAATCCTCTGTCAGTCTTCAGAACCCCAGAGCAGGATCCAACGTACCATTCAGAAAGACATACTGGGCAGTACTACACGCTCCCAACGGCTCACATCCAAAAACTTTTCCCTCATGGACTGCCTCCACGCTTCCAATTACAGATTAAAACGTTTAATGAAGGCTGCGTGATGGTGAGGCCGCCGGCGCTGGAGCTCATCTCATATCTTAAAAAGGCTGATTACAGCAAGCCTCCGCTGCGTTATATGCTCTATGGAGATCTAGGCACTGGAAAGACCATGTGTTTGAGTCATGCCCTGCACTACTGCTACACTCAGGGCTGGCTGATCGTACACGTCCCCGATGCTCATCTGTGGGTCAAGAACTGTAAAGAGCTGCTACCATCGTCTTCCCGTCCTTCACGCTTTGACCAGCCAATCCAGGCATCCCAATGGCTGAAGAACTTCAAAATCACCAATGAACGCTTTTTATCCAAGATAAAGACAACACAGCGGTATGTATGGACAAAGAGAGAAAGTACTGAAAAGGGGCAGCCTTTAGGGGAGCTTGTTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTGGGTGCAGTGCTGCGAGAGCTGAGGCTGCAGGCAGGGGGCGCCACCGAGGGAGAGGGGGCCTTCAAACTGGCCGTGGCTGTCGACGGATTAAATGCTCTGTGGGGCAAAACATCTCTTAAAAAGGAGGATAAAACTACGTGTGAGCCCACGGAACTGACTTTGATTCATAATCTGAGGAAGATGGTGAAAAACAACTggACTGGAGGTGCCATTCTCACAGCTTTGTCTCAGACCGGCTCTCTGTTCCAGCCACGGTCTGCTTACCTTCCTGAAGAGCTACTAGGAGAGGAGGGGTTTGAAAATATGGATCCTTTCGTGCCCATTTCTGTGTCTGACTACAATGAGAAGGAGTTTGAGAGCTGTTATCTTTACTATTTAGACCGCAACTGGCTGCAGCATCAACACAGTCGATctgaagaaggaaagaaagagctTCTCTTTCTCAGCAACAAAAACCCATCCATCCTGGAACGATTGTGTGCTTTCTTGTAAGGCACATTTGGCTACTCTTGCTCTCTGTAtatcataaaaattaaatgtataagcTTGCAgcttttttcataataaaataattttgaaaaacgtGGAAAA

Function

symbol description
dap3 Predicted to be a structural constituent of ribosome. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; gill; immature eye; liver; and nervous system. Orthologous to human DAP3 (death associated protein 3).

NR:

description
28S ribosomal protein S29, mitochondrial-like isoform X1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261646.1 False 1465 mRNA 0.48 13 13061035 13066043
XM_043261647.1 True 1471 mRNA 0.48 13 13061035 13066043
XM_043261648.1 False 1388 mRNA 0.48 13 13061035 13066879

Neighbor

gene id symbol gene type direction distance location
gba gba,LOC107743191,LOC107685577,LOC107673025,LOC107707168,LOC107598431,LOC107596705,LOC107598447 coding downstream 108 13055397 ~ 13060927 (-)
polr3c polr3c,LOC107685575,LOC107743190,LOC107673034,LOC107707173 coding downstream 12632 13042826 ~ 13048403 (-)
deptor deptor,LOC107685573,LOC107673035,LOC107596624,LOC107743215 coding downstream 85241 12947950 ~ 12975794 (-)
col14a1a col14a1a,LOC107685600,LOC107707159,LOC107672958 coding downstream 116965 12839061 ~ 12944070 (-)
LOC122361014 mtbp,LOC107596625,LOC107685571,LOC107707175,LOC107673040 coding downstream 235474 12806228 ~ 12825561 (-)
rusc1 rusc1,LOC107743195,LOC107692542,LOC107596619,LOC107707166,LOC107598429 coding upstream 33979 13100858 ~ 13116095 (-)
fdps fdps,LOC107673012,LOC107692580 coding upstream 49598 13116477 ~ 13119873 (-)
LOC122359944 NA coding upstream 53987 13120866 ~ 13123887 (-)
LOC122359945 NA coding upstream 57469 13124348 ~ 13126202 (-)
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding upstream 69768 13136647 ~ 13143911 (-)
G112229 NA non-coding downstream 34906 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 408629 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 449041 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 570915 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 573342 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 121040 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 147051 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 150324 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 222326 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 364265 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 682586 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1193720 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1649258 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1674042 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1774603 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 587181 13654060 ~ 13683909 (-)
G112478 NA other upstream 1167675 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1431384 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1515600 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1832303 14899182 ~ 14904907 (-)

Expression


Co-expression Network