LOC122360799 (tmtopsa,LOC107573386,LOC107550426,LOC107653523)


Basic Information

Item Value
gene id LOC122360799
gene name tmtopsa,LOC107573386,LOC107550426,LOC107653523
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8239331 ~ 8256537 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261660.1
ATGAAGGTCAGTGGTGTGAACACCCCCATGAGCCGCAAAAGAGAGCACCGGGTTCTACTCATGGTGATCACCATGGTGATCTTCTATCTACTCTGCTGGCTGCCTTATGGGATCATGGCTTTGCTAGCCACTTTTGGAACCCCAGGactggtgactgtggaggctAGCATAGTGCCATCCATCTTAGCGAAATCAAGCACGGTCATCAATCCTATCATCtacattttcatgaataaaCAGTTCTACAGGTGTTTCAGAGCTCTTTTCAACTGTGACCAACACCAGCGATGTTCTAGTCTGAAAAGTTCTTCAAAGGTAACTAAACCAGTTCGGCCTGGACGACGCACAGACAACTTCACTTTTGTGGTTGCTTCATTGGGACCCACAGCGCTGCCCAACCAGGCAAACCCAGCTGAAGACGGCCCTCTATCAACAGATAATGCCAAACCTGCAGTGGTCTCCTTGTGGCCCATTATAATGGTTGAGAGTTATTCTGCTTCAAAAATGGTGACACTTGAAGAAacttttcacacaaaatga

Function

symbol description
tmtopsa Predicted to enable photoreceptor activity. Predicted to act upstream of or within several processes, including phototransduction; protein-chromophore linkage; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

NR:

description
PREDICTED: parapinopsin-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261660.1 True 540 mRNA 0.47 2 8239331 8256537

Neighbor

gene id symbol gene type direction distance location
adipoqb adipoqb,adipoq,LOC107681756,LOC107755695,LOC107566714,LOC100653481 coding downstream 38992 8195101 ~ 8200339 (-)
mpp7b LOC107681820 coding downstream 95377 8105226 ~ 8143954 (-)
LOC122360189 LOC107691296,LOC107550438,LOC107747520 coding downstream 165027 8067575 ~ 8074304 (-)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 186146 8005718 ~ 8053185 (-)
gata6 gata6,LOC107681823,LOC107708510,LOC107747517,LOC107691181 coding downstream 255042 7977629 ~ 7984289 (-)
LOC122360914 snx10b,LOC107743219,LOC107596759,LOC107685610,LOC107684554,LOC107744712,LOC108441519 coding upstream 39489 8296026 ~ 8298481 (-)
LOC122360896 pde11al,LOC107743218,LOC107684552,LOC103364058 coding upstream 85063 8341600 ~ 8363640 (-)
pals2a mpp6a,mpp6,LOC107749029,LOC107685533,LOC107596657,LOC107678134 coding upstream 178109 8434646 ~ 8451791 (-)
LOC122360915 NA coding upstream 196286 8452823 ~ 8453220 (-)
LOC122360918 stk31,LOC107678124,LOC107685609 coding upstream 198429 8454966 ~ 8466094 (-)
G110548 NA non-coding downstream 155 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 3538 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 246464 7988950 ~ 7992867 (-)
LOC122360975 NA non-coding downstream 278956 7958881 ~ 7960375 (-)
G110449 LOC107708546,LOC107681784,LOC107691124,LOC107566457 non-coding downstream 334738 7849679 ~ 7904593 (-)
G110753 NA non-coding upstream 291245 8547782 ~ 8551552 (-)
G110773 NA non-coding upstream 333361 8589898 ~ 8590634 (-)
G110807 NA non-coding upstream 588988 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 744250 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 748001 9004538 ~ 9005206 (-)
G110544 NA other downstream 22736 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 146876 8082900 ~ 8092455 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other downstream 408581 7828215 ~ 7830750 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other downstream 620735 7441898 ~ 7618596 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other downstream 1037950 7195490 ~ 7201381 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other upstream 42252 8298789 ~ 8302245 (-)
G110556 NA other upstream 55728 8312265 ~ 8316685 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other upstream 376813 8633350 ~ 8636222 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 889393 9145930 ~ 9152183 (-)
G110974 NA other upstream 1014434 9270971 ~ 9272605 (-)

Expression


Co-expression Network