LOC122360802 (LOC107749154,LOC107596765,LOC107686954)


Basic Information

Item Value
gene id LOC122360802
gene name LOC107749154,LOC107596765,LOC107686954
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 9149115 ~ 9157421 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261663.1
catgtatttaattattcaattttGAGTTATCTGGCCCTCCATAAACTGTCTTTAATATGTTGTCATAATTCTAGCATTCAAGAAAATACTggaatgtaatgtaaaatattttaacagaatCTTTAATGCTATAGTctgttaatacatatttatgtaatttagtttccttatttttatattttattattagattacaAACGTAATTTTTTGCATTAGAATTTATGTGTTAATTAAGAAATCTTTAAAAGCTGCAcgtgcattttaatttacaatattCTTTAATGTAAtcttcataaatgcatttttgctaaatataacttaaatatatagttacttttgtattgtaaataagtaaataattaaatacaaatagtaTTTGAGTCGTCATCTTTTACATTACCACTGCAGAACAATGCGACTCTGATTATGAGCATTAAAAGTCAGAAGCGCATATTATCATTGCGGCCGCAGGGTGGCGCTCTCCGCCAACATCCCACTCAAACCAGCCCACAGATAACGCTCCAGTATTTTGAGATGCTGGTCGCAAGACCGATCGTTCGGTTGCATTATTCGAGAAATTAGACGCAAACGCTCATCTTTGCGCTCTGACTGTTTTAGGCGTCCCGCGATCCTCCGAAACGTCACCTCGCCGCCGCGCGGATGCTCTCGCGCGCCTGGAATAAACACCGCATCATCTCCCGCCCGCGAGCGCACAGCGAATGAATGAACGGACGAGGCGAGCGATGCTGCGCTTCGCCTGGGAGGGGTAACGCTAGCAGCTTTTGTTACAATAACGAACTCGGCGCGGCGCTAAGATGTTCCCGTCGTGCTATTCCAAGCCCAAAAATGGCTCTCAGTTCAAGATGTCTTACACTAAAGTGATTTTCGGGGTGTTGGTGGTGTATGTCCTCCATACGTGCTGGGCCATATACGGCTTCATTCACACCAAACCCTGTGACGGCTCTAAAGGGGACAGCTGCGTTACATCTTACCTCACTGTCAAGCCTCGACTTCAGCTCAGTATCTATTCCGCTCTGGACCCCGGCGATGAAACTGGATACAACCTACTGTTCAGAGTGGACAAATTTGACATTCACGCCAAGTTTGAAAGGAAGGCGAGTGTCGCAGTTCCCGAGATGACCCATGACAATGGGACGGTCCATGCTGTGGTGTTTGTGCACAAGAGTGGAGTTTTGCCTTGGAAAGACAGTAGACACGTGCGGCTTGTGGCACGTCTTACCTCTCAAATGGTGCCTCTTCAGTCTGGCGGTCGTGAGGCACCAGAAAGGCAGCAGATTGTTTCATACTGGAGATCACGACTTACCTTGAATGTAATGAATGAAGACTTCACCTTCAACAGCGCTTCGGTGCCCAGCGACCTTCGCCGCTATATGAAAATagttgAAGAtggaaaaaaggagaaaaagaaatttTATCTGCCACTGCTACTGGTTGATGAACTAAGAAGCAGATTACATGACTTAATAGAGATGAACAGCACCACAAAAGCAGTCCCTCTGACAATATCATATGACACCATTACCTTACGCAAGTTCAGAATATGGATCCACATACAAGCTGTCATATACTCACTCAAACATTTTGGCTTTTCGGAGCAGAATCTCGATGAAATTAAAGCCATGTTTGTTGAGAGTGGGCTACACGTCTTGGCTTTGTCCGTTCTGGTTCCTGCAttccatCTATCGTTCGAAATCTTTGCCTTCAAGAACGACATAAGGTTCTGGCGAGAAAAGAAGAGTTTACAGCTGGGGAATAATGTGTGCTGTGATAATTTTGTGTGGAGATGTTTCAGCACCTTCGTGATATTCCTCCATCTACTAGAAGAACAATCCAGCTGGCTGATTCTTCTTCCCACTGGGATCTCGGCTCTAATTGAGTTATGGAAAGTGAAAAAGGTCTTAGCGCTTTCACCCAAATTTCATgATGAACGAATGGACGATTTCGAGCGAGCAACAGAAGACTATGATTCCAAGGCAATGAAGTTCTTGTCATATCTGATGTATCCGCTGTGTATCAGTGGGGCCATATATTCATACTTAtatctccaaaataaaagTTGGTATTCTTGGATAACAAATGGCCTTATTAGTGgTGTTTATGCGTTTGGATTTCTGTCAATGGTTCCTCAGTTATTCATCAACTATAAGTTAAAATCGGTGGCCCATCTGCAGGTGTCCATTTTTATGTATAAGGGCTTGAACACATTTATCAGTGACATGTTCAGTGGAGTAATAACCACTCCTGGACCCCATCAGTTGGCGTGTTTCAGAGATGATGTGGTCTTCCTCATCTACCTTTATCAGCGCAGGATTTACCCGGTGAACAAGGCCAGGTCACGTGATTACGGGGCACTGCACAGGAAGAAACCCAAAGGAAAGCCACACGAAGACTAACCCTCCGAAGAGTTCTCTGCTTGCGCTCTCCATGCATGCAATACAGGAGAAACGTTACGGAAACTAAAGAAGGGCATTACGGCCGCTGGACGTTCTCTTTGTGTATCCTTGTAATGAGCCTGCCTCCTGCTGTCTGCTGCGACATCCGACAGAGCTGCACGTACAGTACACTCGCGTCCACTCGAACAAGCCAGACCTGAAGGGATCAGCAGCGCACACCTGCTTTAGACTAAATCCGTGTGTAATATTCACTCAGGCCGATCCAACCGACAGTTAGAAAGCGACGTAAGCTCTGAAGGAAACTACAGCGACGCCCACCTGTGCTTTTATAACCTTTGAATTGAATGACTGCAATGCAATACCTACGACCACCGCATCTACGTTACCGTTTTCAAACATTCCGATTTAACGGCCGCTTGCTGTTTTTGAACGGAAAAGCACTTTCCACGGATTCGGAAAGATATTTCGAGTTAGCCGCTTTGCATTTATTTCCGTTTCGCACTTAAGCGGGAAACGACTAACTTTTGTCACGTGCACTATTTGGTCTTGTTTATTACAAAAGCATCATTTTTCTTGAAAACACAACGCCTGTTTGACCATGCCCGGGTTTCTTTTGTCtcctaaaacatgttttaattaaagtttgacGATACAA

Function

NR:

description
PREDICTED: cleft lip and palate transmembrane protein 1-like protein

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261663.1 True 3069 mRNA 0.43 18 9149115 9157421

Neighbor

gene id symbol gene type direction distance location
LOC122360027 LOC107751895,LOC107656720 coding downstream 116 9145900 ~ 9148999 (-)
ptpn2a LOC107748621,LOC107656702,LOC107686952 coding downstream 30997 9112262 ~ 9118118 (-)
cep76 cep76,LOC107684173 coding downstream 38360 9103514 ~ 9110755 (-)
id4 id4,LOC107656716,LOC107748665,LOC107751915,LOC107596695,LOC107684172,LOC107564867 coding downstream 119409 9026980 ~ 9029706 (-)
ncalda ncalda,ncald,LOC100692199,LOC105901278,LOC106931336,LOC103042493,LOC108268956 coding downstream 152129 8961054 ~ 8996986 (-)
cmtm8b LOC107749122,LOC107702023,LOC107564882,LOC107751904,LOC107661990,LOC107570991 coding upstream 162134 9319555 ~ 9322529 (-)
ulk4 ulk4,LOC107723070,LOC107704090,LOC107570990,LOC107668185,LOC107657572,LOC107564876,LOC107573651 coding upstream 230089 9387510 ~ 9523997 (-)
ccka LOC107751914,LOC107704089,LOC107601665,LOC107657574 coding upstream 469825 9627246 ~ 9629046 (-)
trim71 trim71,LOC107751884,LOC107601676,LOC107704101,LOC107657583,LOC107723073,LOC107551222 coding upstream 520802 9678223 ~ 9702267 (-)
tcaim tcaim,LOC107657582,LOC107723074,LOC107751885,LOC107601675,LOC107704100 coding upstream 548419 9705840 ~ 9714651 (-)
G110852 NA non-coding downstream 117666 9031135 ~ 9031449 (-)
G110849 NA non-coding downstream 141583 9007297 ~ 9007532 (-)
G110842 NA non-coding downstream 143909 9004538 ~ 9005206 (-)
G110836 NA non-coding downstream 147687 9000787 ~ 9001428 (-)
G110807 NA non-coding downstream 303122 8845525 ~ 8845993 (-)
G111005 NA non-coding upstream 228758 9386179 ~ 9387391 (-)
G111021 LOC102788557 non-coding upstream 442511 9599932 ~ 9607073 (-)
G111024 NA non-coding upstream 462698 9620119 ~ 9620453 (-)
G111025 NA non-coding upstream 466279 9623700 ~ 9624119 (-)
G111045 NA non-coding upstream 517443 9674864 ~ 9676505 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 512893 8633350 ~ 8636222 (-)
G110556 NA other downstream 832430 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 846870 8298789 ~ 8302245 (-)
G110544 NA other downstream 932520 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 1056660 8082900 ~ 8092455 (-)
G110974 NA other upstream 113550 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 719790 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 1588155 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 1700099 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 2112199 11269620 ~ 11286432 (-)

Expression


Co-expression Network