LOC122360867 (phf20l1,LOC107587800,LOC107704904)


Basic Information

Item Value
gene id LOC122360867
gene name phf20l1,LOC107587800,LOC107704904
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23064745 ~ 23072189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261710.1
atgtatatagtGTATCCTTCCCGTATCGAAAAGATTGATTACGATGAGGGGAAAATGCTTGTGCATTTTGACCGTTGGAGCCATAGGTACGATGAATGGATTCTCTGGGACAGCAACAGACTTCGACCATTAGAGAGACCAGCGCTCCGCAAAGAGGGTCTCAAAGAAGAGGAGGTGTCTGAGAGACTCAGCGAGATGAGAGCATCTCGCCTTCGTGAGCTTCCTGGAAGTACAGAGAGCACAGAGGACCAAAAAGACTTACCCCAGCAGAGACAAgaaTTAAGAGATGGTGAGGAGGTGCTTGCCCGATGGACAGATTGCCGCTACTATCCTGCCAAGATTGAAAGTATCAACAAGGAAGTGTATTGGTTTGTGTTCAAGCAGGACTGGATCGCTCTGGTGAAGGCTGCTTCAGCTGCAGCCAAGAATAAAGGAGGAAACAGGCCACGTACCAGCGCCAACAGCAACAAAGACCGAGAGGACAGGAGGGAACAGCGGTCGGATGAAGAGCATGAGGATGACGATGACGACGGTGATGACGATGACGACGAagacgacgacgatgatgatgtTGATGTTGATGAAGATGAGAGTGAACCAGAGAAACTCGCAGTTCCAGCAGAACTGGACTCAGCTGAGGAAGACAGTAAGCTGGCTGCTGAGGAGCTTGAACCTGCTACCGCAAAGAGGAGAAGCAAAAGACAAGGCAACTTGTGCAGCGGTAAAAGGACACGTCTCAGCAAAGGGGCAGttgaaGACAGCAGCACTGCAGTTAAAACAGAAGCTGCTCCACAAAAGCCAGCTTCAGGAAGTCCATCCACAGCTCCTCCCACTAGCACTGCTCAATCACCAATCAGTGAGAAGGACAAAATGACTGAAGTGTTGTCTAGTAATCAAACAACACTTGAAGGGAACTCACCTTCTGTACTGACAGttaTTAACACCAAGAAGTCAGATGATCCCACTGCTCCTAATGAGTCTTTAATAGACCTGGAccataataaatttaaatgtaaagtcccTGGTTGCTCTAAAGCATTCCGGAAAGCAAAACTGCTGGACTATCACCTGAAGTACTATCATAACACTGAGAAAGAAATGGACAGCGAGGTCTGCTCACCAGAAAGGGTGGGCCAACCAGGGCCCGCGTCTGCTTCCATGCCTACAAGCACCTTGTCAGATATGCCAGATAACAAGAGGCGCAGGACCGTCTCTACTTCTTCCTCTCTGTCCTCTCAGGGCTTCATGCTTCAAATGGACAGCTCTGGCTGTGTGAGGCCTCCAAAGTTCTGTAAGAAGAAACGTTCTTCTGCTTCTATTAGTTCAGACAGACTTTGTATAAAGACAGAGCGGAAATTTAAACTGGAGGATAAATGTCAGTTGTTTGCGAAAAAGAGGGATAAAGACAGAAGGGACAGGAAAGAGAAGGACATTTTCCGaattaaacagaagaaaaagaaaaaaaagaagaagaaatcaaAACTGCACTGTTACTCGGACCTGGATGAGATGTCGCTGGCTTATTTGGATAGGCCGTCTTCCCCAATACATCGCTCTTCCTCTAGTGCCTTCAAGCACAGCACCTTCCAATACCCTCACCTATCAGACATCGACTTCCTGGAAGACTCTACCACTGAGAGTTTGCTGTTCAGTGGAGATGAGTATAACCAGGATCTGGACTCCATCACTATGGAAGACTTCCAGGATGAGGAAGATGATGGTGCCGATGAAATTGTTCGTTGCATCTGTGAGATGGATGAAGAAAACGGCTTTATGATTCAGTGTGAGGAGTGTATGTGCTGGCAGCACAGTGTGTGTATGGGACTTTTGGAGGACAGCATCCCTGATCACTACATATGTTACATCTGCAGAGACCCTCCAGAGAACTACTCTCATCAGAACGCCAAGAAGATCGTGTCCACTCACCAACTGCTGGCTGATGTTTACAGTGTTAAAAACTTGCTCCATGGACTTCAGCTGAAGATGGATATTTTACAaaacaaacacaacccaAGTTTGCACTTGTGGGCCCGGTCTTGGGTGAATTCTGATGAGGACCAACCTATGGGTGGCGTTCCAGACTGCCTACATTTCAAAGAGCACCTCAACCAGAACTCAAGCCCTCAAACTTATATTACAAGTGAGCACAGCTACCAGAAACCTCCCGGTACAGGCCTCGAACACACAAGGGATGAGCAGGGGATGCAAACGGCATCTCAGTTTAACCGAAAGGAGGAAGAGGTGAGCAGTGCCATTGCTCTGTCTGGCTGTGTGAATGACAGCAATATGGGCTCCGTGGAGCAGGCCAGGAACTGTCTGCAATGGCAGATGAACCTGCTTACACACATAGAGGATGCAGAACCAGCTGTCTGGCCGTATGGACCTCCTCGAGAAAGAGCTTGA

Function

symbol description
phf20l1 Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NSL complex. Is expressed in cloaca and proctodeum. Orthologous to human PHF20L1 (PHD finger protein 20 like 1).

NR:

description
PREDICTED: PHD finger protein 20-like protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261710.1 True 2403 mRNA 0.48 17 23064745 23072189

Neighbor

gene id symbol gene type direction distance location
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding downstream 81854 22977925 ~ 22982891 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding downstream 134828 22915967 ~ 22929917 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding downstream 249650 22812569 ~ 22815095 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding downstream 267725 22779235 ~ 22797020 (-)
mrap2a mrap2,mrap2a,LOC107705305,LOC107681427,LOC107556088,LOC107697221 coding downstream 297457 22763204 ~ 22767288 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding upstream 9040 23081229 ~ 23089594 (-)
LOC122360196 NA coding upstream 17768 23089957 ~ 23096651 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding upstream 25078 23097267 ~ 23102702 (-)
LOC122360201 LOC107724792,LOC107552857 coding upstream 30981 23103170 ~ 23109883 (-)
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding upstream 45309 23117498 ~ 23121209 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 8215 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 12470 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 14902 23049549 ~ 23049843 (-)
G115597 phactr4b,LOC107587745,LOC107704841,LOC107597106 non-coding downstream 16050 23046482 ~ 23048695 (-)
G115596 NA non-coding downstream 18452 23046022 ~ 23046293 (-)
G115611 NA non-coding upstream 70 23072259 ~ 23073450 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding upstream 2114 23074303 ~ 23077870 (-)
G115621 NA non-coding upstream 93004 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 112861 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 254019 23326208 ~ 23327893 (-)
G115554 NA other downstream 130778 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 163558 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 975653 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1096210 21964855 ~ 21968535 (-)
G115149 NA other downstream 1260941 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 447619 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 510804 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 595876 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1245293 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1292451 24364640 ~ 24369566 (-)

Expression


Co-expression Network