LOC122360891 (thsd7a,LOC107671443,LOC107688266,LOC107756884,LOC107726647,LOC107592524)


Basic Information

Item Value
gene id LOC122360891
gene name thsd7a,LOC107671443,LOC107688266,LOC107756884,LOC107726647,LOC107592524
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 28090885 ~ 28127371 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261721.1
ATGGATCTGACGGTCAGATCCAATAACTATAGTGTGCATTATAAAGTTAAAGCTGGCAGACTTATTCGCTCGCTGTCCTCTGAGAAAGAGAGCGCTTTGATTCACATTCCGCTGGGCTGCTCCGTCATCTGCAAACCTGTAAATGTCAGCAATTATTTAGACACACGCTCCGTTCTCCGCCGGCTGCATCGACTATCTGCCACTCGAGGTTCCAGCTGTCCTAACACCAGCGCCCTTCAGGAGGTGCGCGACTGTAATGAGCATCCCTGCATCGTGTATCACTGGCAGACGGGGCCCTGGGGACAGTGCGTGGAGGACACCACCACATCCACCCTCAACACCTCCTCCAGCGCGGACAGGTCCACCTGCACCATGGGTGTTCAAACGCGCAAGGTCATCTGCGTAAAAGTCAACGTCGGACAGGTGCCGCCCAAAAAATGTCCTGAAGCCCCCCGGCCGGAGTCAGTGAGACCCTGTCTGCTGCCCTGCAAGAGAGACTGTATAGTCACATCCTTCAGTGAATGGACAGAGTGCCCCACTTCCTGTGAAGCAGGTGTAAATGGGCAGAAGAATAAACAGTATCGCTATCGAGTGATCATCCAGATGCCAGCTAATGGAGGTCAGGAGTGTCCAGAAGTCCTTTATGAAGAGAAAGACTGTGCGactccatctgtctgtccgGGTTACAGGTGGAAAACGCACAAGTGGCGTAAATGTCAGCTGGTCCCTTGGAGCATCCGCAGGGACACTAAAGGAGCTCAGGAGAACTGTGGAGCTGGAGTCCAAACCAGAGCTATCTCGTGTAGGCAGCTGGATGGTACAGTGGCTGATGTGGTTCGGTGTCTGAAGTTTGCCAGCAGCATGCCGGTGATGAGCCAGCCCTGCCAGCTACCGTGTCGAGATGACTGCCAGCTCACCAGCTGGTCCAAGTTCTCTCCCTGCACCTCGGACTGCGTAGGGGTCCGTACGAGGAGGAGAGCTCTCGTGGGAAAAAGCAAGAAGAAGGACAAGTGCAAGAACAGCCAGATGTACCCGCTGAGCGAGACCCAGTACTGCCCATGTGACAAATACAACGCCCAGCCGGTGGGGAACTGGTCTGACTGCATCCTGCCCGAGGGCCGCGTGGAGAACGCCGCAGGCCTGAAGGTGTTGGGAGACGTGAGAGACGTGAAGGAGTGCGGGCAGGGCTACCGCTATCAGGCCATGGTGTGCTACGACCAGGACAACAGACTCGTGGAGACGGCACGCTGTAACAGCCACGGGTACATCGAGGAGGCCTGCATCGTTCCCTGCCCGTCTGATTGTAAACTCAGTGAATGGTCCAACTGGTCGCGCTGCAGTAAATCCTGTGGCAGCGGGGTCAAAGTTCGTTCGAAATGGCTCAGAGAAAAGCCTTACAATGGAGGAAGACCCTGCCCGAAACTGGACCACCTTAACCAGGCACAGGTGTACGAGGTGGTCCCGTGCGTCAGCGACTGCAGTCAGTATATCTGGGTCGCTGAACCCTGGAGCGTGTGGAAGGTCAGTAACGTGGATCTGAAGGAGAACTGTGGAGAGGGCGTTCAGACCAGAAGAGTCAGGTGTATGTTGAACACAGTGGACGGTCCCTCCGACGCAGTGGAGGACTATCTGTGTGATCCAGAGGAGATGCCGCAGGGGACGAGGGAGAGCCGTCTGCCCTGTCCCGAGGACTGTGTGCTGTCCGACTGGAGCCCCTGGACCCCGTGTGACCTGCCGTGTTCTGGAAGAGGAGACCGGGAGAGAGACGGCTTTGCGCTGCGTCTGCCTAAAGAAGGAGAGGACTGTCCGGTCAGCATGCAGACCGAGCCCTGCTTCCTGAACCGAAACTGTTTTCACTACAGCTACAACATCACCGACTGGAGCACATGCCAATTAAGTGCCAGCGCTGTGTGTGGAATCGGTCTCAAGACGAGGATGCTGGACTGCGTTAGAAGTGACGGCAAATCTGTCGACCTCAAGTACTGCGAGAAGCTGCGCTTGGAGAAGAAATGGCAGATGAACGCTTCCTGTACGGTGGAGTGTCCAGTCAACTGCCagctctctgattggtcagcatgGTCAGACTGCTCACAGACCTGTGGCCTTGAAGGGAAGATGTGGCGCAGACGGACGGTGGTTGAGGCGTCTCAGGGGGACGGCAGGCCGTGTCCGGCTCAGATGGAGCAGTGGAAGCCGTGTCCTGTGAGACCCTGCTACAGATGGCAGTACGGCCCGTGGTCCGAGTGCCGTGTCGAGgagGTGGTGTGTGGGGTGGGCCTGCGTTTCCGGAACCTGTCGTGCTTTGTATCAGATGGCTCCGGCGATGGGAAGAGCAGTATTGTAGAAGAAGAGCTCTGTGCTGGATTGGAGCAGGCTGTCGATGGAGATAAGAATATTGTTCTGGAGGAGACCTGCACCTTACCCTGCCctgGTGACTGTTACCTGATGGAGTGGTCCGACTGGAGCCCGTGTCAGAGTGTGTGCGTGAAGGGTCAGCGGTTGGACTTCAGTCCGGCTCAGGTCCGTTCTCGGGCCGTCATCGCTCAGGAGCCGGAGAACATCGCTCAGTGTCCCGATCAGGAGTGGCAGACCCGGCCCTGCAGCAATGGGGAGTGTTATGAGTACCAGTGGATGGGCAATCCTCAGCTGATCTGGTGTCAGCGCTCGGATGGAATAAACGTCACAGGTGGATGCCCTCCAGCGCTACTGCCAGGGACGGACCAGTCATGTGATCCGCCTTGTGACAAACCACAGTCATTTTGCTCAGAGgaaggcgtgtgtgtgtgcgaggagGGCTACACCGAGGTGCTCACGGCCGAGGGGATGCTGGAGCAGTGTGCTCCCATCCCTGTGCTCGAAATCCCCACCGCAGGGGACAAGAAATCTGATGTGAAGACCAGCAGGGCCATCAACCCCACCCTGCCCACCACAATACAGCCTGGCGCGCCGGGCATCACCTGGTACCTGCAACCCTTTGGACCAGACGGAAATGGTAACGGAGGCGCGGAGTTCCCCGGTAGTTTATCAGGTCACGATACCGCATGCTCGCACAGCAGTGTTGCCGTGGCCATTCGCTGCCGACGCCAGATTTCGCCAACAGCATGCGGCGGAGGTTGTCGCTCCATGAGCGATTTCCACCTGCCCAGGCGTCGCGTTGTCAGAGTCGGCGCCAGTTAG

Function

symbol description
thsd7a Predicted to be involved in actin cytoskeleton reorganization. Located in plasma membrane.

NR:

description
PREDICTED: thrombospondin type-1 domain-containing protein 7A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261721.1 True 3177 mRNA 0.57 23 28090885 28127371

Neighbor

gene id symbol gene type direction distance location
zmp:0000000881 LOC107756898,LOC107688220,LOC107592478,LOC107726696,LOC107671483,LOC107592126 coding downstream 119876 27966442 ~ 27971009 (-)
mex3a mex3a,LOC107592477,LOC107688221,LOC107592188,LOC107756899,LOC106605309 coding downstream 151134 27933074 ~ 27939751 (-)
tmem176l.4 NA coding downstream 190125 27896728 ~ 27900760 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding downstream 396947 27690440 ~ 27693938 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding downstream 400765 27685267 ~ 27690120 (-)
G116867 NA non-coding downstream 129205 27960631 ~ 27961680 (-)
G116865 NA non-coding downstream 136178 27952568 ~ 27954707 (-)
G116835 NA non-coding downstream 383427 27706606 ~ 27707458 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding downstream 385951 27701126 ~ 27704934 (-)
G116833 NA non-coding downstream 413626 27675988 ~ 27677259 (-)
G116868 NA other downstream 125927 27963488 ~ 27964958 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other downstream 286115 27707716 ~ 27804770 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other downstream 463225 27622629 ~ 27627660 (-)
LOC122360079 NA other downstream 511019 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 730056 27358707 ~ 27360829 (-)

Expression


Co-expression Network