sv2a (sv2a,LOC107592458,LOC107688240)


Basic Information

Item Value
gene id sv2a
gene name sv2a,LOC107592458,LOC107688240
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18884553 ~ 18916456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261722.1
ACCCCGTTACACGTCACACGCGCCTTCGTTACAGGGTGAAGATACAGGCAATGTCACACAGCCCTCCTCATCATCACGACTAAAAAAAATCACCGTATCTTATATACAACTATTCCTGACAGcgtttggaaaaataataaccaaatCGCGCTGtgTAGAGCTCTTTGCCGTAGCAGCTGCTGTCCAAGGTCCTGAACTTCTTCAGCCCGGCTTCACTCTACTACATGCTAACAGGCAGCTCCTGACATCCAGTTCCAGCACTCTTTACATCAGCGGACAACTTTGAACCATGGAGGAGGGTTACAGAGACCGTTCGGCCTTCATTAAAGGTGCTAAGGACATTGCCAAAGAGGTCAAAAGGCAAGCAGGTAAAAAAGTGGGCCGCCACATGGACAGGGTGAGCGACGAGTACAGCAAACGCTCTTACACCCGCTTCGAAGAGGAAGACGACGATGACGATTACCCCGTGCAGGCCCAGGACGGCAGCTACTACCGCAGCAACAGCAGGGCCAACGACGACGAAGGGGCTCACAGCGACTCCACAGAGGGCCACGATGAGGACGATGAGATCTACGAGGGCGAGTACCAGGGTATCCCCAGAAATGACTCCGTTGAGAAGGCCGACAGACCGGTGGGCGGAGTGGGACAGACTCAGTTCCGCGACATGACGCAGTATGAAGGGGAGAGGAGGAAGGACCAGGAGGAGCTGGCCCAGCAGTACGAGACCATCCTCCAGGAGTGTGGCCACGGCCGCTTCCAGTGGACCCTGTACTTTGTGCTGGGTCTGGCTCTCATGGCTGACGGCGTGGAGATCTTCGTGGTGGGCTTCGTACTGCCCAGTGCTGAGAAAGACATGTGTTTGTCGGAGCCCAACAAAGGGATGCTGGGTCTAATTGTGTATCTGGGTATGATGGTGGGTGCCTTCGTGTGGGGAGGTCTGGCTGACAGAATCGGCCGCAGACAGACTCTTcttatctctctctccatcaaCAGTGTCTTCgctttcttctcctcctttgTCCAAGGATACAGCTCCTTCCTCTTCTGCCGTCTGCTCTCCGGTGTGGGGATCGGTGGCTCCATTCCCATTGTGTTCTCGTATTACTCTGAGTTTCTGGCTCAAGAGAAGCGCGGTGAGCACTTGAGCTGGCTCTGCATGTTCTGGATGATTGGAGGCATCTACGCTGCTGCCATGGCCTGGGCCATCATTCCCCACTACGGCTGGAGTTTCCAGATGGGCTCGGCCTACCAGTTTCACAGCTGGCGAGtgtttgtgctggtgtgtgCGTTCCCGTCCGTCGCCGCTATCGCAGCGCTGACCACCATGCCGGAGAGCCCACGCTTCTTCCTAGAGAACGGGAAACATGATGAAGCTTGGATGATCCTGAAGCAGGTCCATGACACCAACATGAGGGCCAAGGGCTACCCGGAGAGGGTGTTCTCTGTCACCACTATTAAGACGGTGAAACAGATGGATGAGCTGGTGGATATGGGTGGAGAGGCCACAGCCTGGCATCAGCGCTGGAGGATCAAGCTGACCAACCTCTTCCATCAGGTGTGGGGCAACTTCCTGACAGTGTTTAATCCAGAGTACCGGAGGATCACCTACATGATGATGGCCGTGTGGTTTTCCATGTCCTTCAGCTACTACGGGCTGACTGTTTGGTTCCCTGACATGATCAAATACCTGCAGAAACAAGAGTACTCCTCTCGCACAAAGGTCTTCATCAAAGAGAAAGTGGAGCATGTGACCTTTAACTTCACCCTGGAGAACCAGATCCACCGGAATGGAGAGTACTTCAACAACAAGTTCTTGAATCTGAAGATGAAGTCTATGGTATTTGAAGACTCCCTGTTTGAGGAATGCTACTTTGAGGATATCACGTCAAGCAACACCTTCTTCAAAAACTGCACCTTCATCTCCACCCTCTTCTACAACACAGACTTGTTCAAGTACCGGCTGATCAACAGCAAACTCATCAACAGCACTTTTCTGCATAACAAAGAGGGCTGTATGCTGGATTTCAGCGATGAGAACAACGCATACATGATCTATTTCGTCAGCTTCCTCGGCACACTTGCTGTCCTGCCCGGGAACATCGTGTCTGCCCTGCTCATGGACAAGATCGGACGTCTAAGAATGCTGGCGGGTTCCAGTGTGATTTCCTGCGTCAGCTGCTTCTTCCTGTCATTTGGAAACAGTGAATCTGCTATGATCGCCTTGCTCTGTCTATTCGGGGGCATCAGCATTGCCTCGTGGAATGCCCTGGATGTGCTAACAGTGGAGCTGTACCCCTCGGACAAGAGAACTACAGCCTTCGGCTTTCTAAACGCCCTCTGTAAGTTAGCTGCGGTTCTGGGTATCAGCATCTTCCAGTCGTTCGTGGGCATCACCAAAGCGGTGCCCATCCTCTTCGCGTCAGGGGCTCTGGCAGCCGGAAGCTTCTTGGCTCTCAAGCTTCCCGAGACTCGCGGTCAGGTGCTCCAATAGTGCAGCGTTCCAGCATGCAGGTGCCGGCGTTCGAGTTTGACCCCGTCCGTGAGCGAGCAATGCTGGAAGCAGCCAAAACAAATCCCGCATTTACAGATATCTTCATTCCTCCAATATGTGCAATcgtattaccattattatttcATCCAATTGAATTTGATTTCATTCAGATCTACATGTATAGATATGTTCCCTGCTGGTGTCTCACAGGAATATCGgaaaccctgtgtgtgtgtgtgtgtgtatgtgtagaaAAACTGCCATGTTAAACACATTCCAGCTTTGCGTTATGGAATGAATGCGAAATTTAACATGTTCATTTTGACTTTCCCTTTAAATCTTCATCCGAGCCATCATGACGTGATTTGAAAACCATCACTGAGGACCCGTGAAATCTGTAGGTAGATATGTGTGAATGGACAGTGTTGATCTAGTGGTGCTGGTGATGGTTATTGTTATTGCTTTACTCTAGTCCGTCGTGTCCCAAAAACGTAAAAAGTGCGAGATGCCGCAATTGTCTGCAACACCGGCTCAAGCACTCctcactttttaaatgttttaatgcattaacactGACGTCAAATTATTTATAGACAGTGGTTCACtcatttttggttttcagaATTCAAATTTGGTTGTTCCTTCAAAACGTCTGATAATCGATGGTGCTGTGCATGCGATGAAGCGTGGCGATTCGTAAGAATATGCTCGAAGATAGTAAACATAACTGATGAAAGTGCACTGTATTACGTTACTCTACCTGTGGTTCTTAGgacatgatttaaaatatgagATAAGTGACACGATGGGTTGTCATTTGTATGGTTTAGTACgccattattcatattttgcgTTGTTTTATGCTACTATCATACTTCGTCCCGGGGGGGTTTGTGTTCCTACTGAGATCCACGGAGCTGTTTTGAATGTGAGACAAACGTTACATTCGCCCCGGTTTTCATACAAGAAATCCACCCGAACACgcaagaaaaaaactaaaggaaaaaatgaacaaatgaagcACAATGTGATTTGATGAAACTGTCAAAaacaatagttttattttgatgattgtgtaaattatgtactgaatataaatatataaaaattagcTGTAATTCAAGTCTGTCTGTTTGAACACtcaaactattattaaatatacaatatattattatatatataaatatatgaaaagatATTTACATGTTCAAATGTTGAACTAGTATCAACATGTCTTAGATAGATGCCATttgatgtatgtatatacagtttATCTGTTCATTAagggatttaattttttttatcaaagcaaatatattaaaaaatggcTGAACAAGTCAATACACTGATTTGCAGCACACACAATCGCCCTCTTTCACATTTTCTCTTGTGTTCTTGTAAAGAAACAGAGGTATCCGTCTGTGTGTGGGTATGTGTGTAAGTATGGAAGTACGTGTGCTTGCATGTGAAATGTTGAGTGTTCTctgaatatttgtatttatttctataactGTTTAAGAGAGTTtgattttatagtattttttacttTGAGTATCTGTAGAAACAGACGTAGTGCCACATGCAGGGTGAATTTTTTGCTGTATCATTGTTGACCTGATGTTCAATTCTTTGGTGACTTGGTAGCAGTGACTGAATATAGCATCGAAAAGAAGCGTGAGTCAAAACCCGACGGATTtcaaaaatgaagcaaaaaccAAGGATATCCCATTAGGACAAGCAATTCTGCTACATTTTACCAAGCACAATTAATACTAGCTCCATCGTGGAAAACTAGTTAAATAACCAGATaacgatgcaaaaaaaaaatcagagaaGACAAAACCCGACCTGGCTGGAAGCTGTGTTTCAGCCCTGTCGCTCGTAACACAGCCAGAGCTTAAACGAAAACTGTTTTTGGTGTCATTCTCAACGTTCTTTACTGCCATTTTGTAGGATAGCAGCCATATTATGTGCTCAGAGTAGACACACGATACAACCaaccatttttagatttaaaaaatacttcGACCAAAGCGGTTACCAAACGCGAAACGATTCATTTTAGGCACAACCGTAACTTCCAAGCTCTTTAAAACGACAGCCTTACAGCCTATTTCAATTGGAGAGGGCGGCACTGCGTCGCGTAGTTCAAAAATTGGAGAAACTGCCATCCCTGCCGTGGCCAGCGGTCGCAAGTAGTGTCACAGACGCTGTAGTGACAATCTTTACGTGTGCCATGTGTGACCGTGCGCATCTTTAATTGCCAAATATTTTCTACTTCCTCGGTTTGTACTGGCAGATCTCGCATCACggcacagacaaaaaaaaaaacgtgacaCACCGACGTTCTAGCAGGGTGCGGCGATCCAAACAGGAAGagaacgtaataaaaacacaagttttGAGGCTATAGACGCGTCTTCTTCTTCTGGGACGTACTTCATGCTCTCGCAAATGTTTAAAACGAGCTGGTTACCATTCAGGAAAGGCTTGAAAATGATAACTATTATAGATAAGGTTGGTCTGTAAACTAGATAATTGTTTGTACGCACAACCAatcatccatatatatatatatatatatatatatatatacatatattgaaCTTCTTTGATGTCACTTTCGAAAAGGCCCATCGAGAACATTTCCAAACAGTCCCGCAGTTCTTCACATCTCCAACGTGTAGCTGTTGTTCCCTCCATTGAATTACAACGAGTATGTCATAATTGCTGTCGTATGCTGTGAATTACAGTAACTAATCTCAGTGAAGCTATGACTTATCTGTGTACAAGCAGTCCTGGATTTGGTCCTCACTTAAGATTGTGTACTGGTCGTAAGACTTTTGGGTTTTGTTACAGGGTCTTTTGTATTTCTAAACGTGTTCACTTAGCAACAATCAACCTTGTGTGCAAAAAGAAATCAAAGCAATAAGTGGTAAACATGTTCGCTCTGCCCCCCGAACTATTGGGCAAGAAAGCACACTAAAATATCCGCTGGCCATATTTGATGAAAcagcagatgaaagaaaacGACAGGCCCGACATCCGTGTACTCTACAAATATACCATAGGTCTTCTGATGCTTTTGTCAGTTTCAATGTATTGCCATAATTTAAATGTGACAGAGAGTTTATCACCTTATCATTGTACTGTGCTGTAGAGATTGTAGATGTTtgtatgtaaatgaataaatatgtggaataataaaacaaacagacaaaaaaaagataaaaaaaaacgagatAAAAATGTTGAACATGAGAAATAGAGTACTACTGTATGTTGTTcattttgtgatttgttttttgtacATGAGAATGGAAATGTTGACATTATCGCTGAATATAGAGACTATTCCATCCTTACCAAAATGGTTCTGTATTACAGTTTGTGAGAGATTTACTTTGCGTTTTTTGACTCGTATTCTGGGGATCGGACTGCGCTTGTGCAGTTAAAAGTGTCCCTCGGTggatttaaaacatacatacaaataataaacaaatggtATAATGCTTGAA

Function

symbol description
sv2a Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within chemical synaptic transmission; neurotransmitter transport; and transmembrane transport. Predicted to be located in cytoplasmic vesicle; membrane; and synapse. Predicted to be integral component of membrane. Orthologous to human SV2A (synaptic vesicle glycoprotein 2A).

NR:

description
synaptic vesicle glycoprotein 2A-like

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261722.1 True 6009 mRNA 0.44 13 18884553 18916456

Neighbor

gene id symbol gene type direction distance location
bola1 bola1,LOC107592543,LOC107671409 coding downstream 856 18881827 ~ 18883697 (-)
nr2f5 nr2f5,LOC107592459,LOC107592141,LOC107726692,LOC107671473,LOC103038004,LOC108433883,LOC108256176,LOC105891836,LOC105005680,LOC100380645 coding downstream 24809 18845744 ~ 18859744 (-)
LOC122360857 NA coding downstream 86479 18797261 ~ 18798074 (-)
rpz5 NA coding downstream 102458 18780999 ~ 18782095 (-)
LOC122360855 NA coding downstream 128156 18752790 ~ 18756397 (-)
mtmr11 mtmr11,LOC107592457,LOC107688241,LOC107726680,LOC107671475,LOC107592143 coding upstream 11625 18928081 ~ 18950938 (-)
otud7b otud7b,LOC107726676 coding upstream 37873 18954329 ~ 18976693 (-)
rbm8a rbm8a,LOC107671476,LOC107592456,LOC107592145 coding upstream 61080 18977536 ~ 18980626 (-)
paqr6 paqr6,LOC107728479,LOC107688246,LOC107726661,LOC107671432,LOC107592147 coding upstream 139701 19056157 ~ 19074810 (-)
smg5 smg5,LOC107728478,LOC107688247,LOC107726659,LOC107671430 coding upstream 162497 19078953 ~ 19094738 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 143724 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 196158 18687166 ~ 18688395 (-)
G114231 NA non-coding downstream 335614 18548188 ~ 18548939 (-)
LOC122360486 NA non-coding downstream 339873 18528871 ~ 18544680 (-)
G114075 NA non-coding downstream 508939 18373968 ~ 18375614 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding upstream 68947 18985403 ~ 18987926 (-)
G114399 NA non-coding upstream 76406 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding upstream 96199 19012655 ~ 19041766 (-)
G114430 NA non-coding upstream 289663 19206119 ~ 19262830 (-)
G114458 NA non-coding upstream 363972 19280428 ~ 19283527 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 63443 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 186146 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 213279 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 233944 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 364266 18492626 ~ 18520287 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 500506 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 679976 19596432 ~ 19657724 (-)
G114715 NA other upstream 1250339 20166795 ~ 20177758 (-)
G114793 NA other upstream 1525509 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1719669 20636125 ~ 20650937 (-)

Expression


Co-expression Network