tnfrsf1a (LOC107685522,LOC107748890,LOC107596732)


Basic Information

Item Value
gene id tnfrsf1a
gene name LOC107685522,LOC107748890,LOC107596732
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8574027 ~ 8580269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261747.1
TCGGGGATGACAGAACGCTTCTGGGAGAAGAAAAGACGATGTTGGAACGCCATGAGTAGAGTGAGTTTGGTGAAGTGAGAAATACTGCTTTAGCGCCGTGTAGCGGCCATGAGGGACCGTCAGatgtttgcttgtgttttgCTGGCTCTAATCAGCCAGTCATGTATAATATCAAATTTCCCAGTTAGTGGAAGTCCGTCTGTGAAAGGAAACTGTCCTGATAATGAATACTGGAATAAGAATGGATTCTGCTGTGATAAGTGTCATCCAGGCTTTAAATTGAAAGAGAAATGTCCTGAACCAAATAAAAGGTCCAAATGTGTAAAATGCGAGGCTGAAACCTACCTAGAAAACTCAAACCACAATGAAAACTGCTTCAGTTGCACGAAGTGCAACAAAgTCCATTCCAAAGAGATATCACCATGTACATACAAAAGCAACAGGGTGTGTGGGTGTGAGCCTGAATACTACTACAAGAAACTAGGTGACTTGGCATGGGAGTGCTCTCGCTGTAAGAAATGTGGATCCGGGCAGCTGGAAGCTGCACCATGTGCTGGGGAACAGAATAGAAAGTGCCAATGCAAAGAAAACCATTATGCTGTCAAGGGAACGAACGTCTGTGAGCCGTGTGTTGAATGTCAGGAGGAGTGTCCACATTTGTGCAAATCCAGCACGCCTCCTACCCCTTTTATGTCTATCCACCCAACTAGTCCTTCAGATTTAATGCCCCAAATACTGGTCCCTGTATTTGCGTGCATCACAGTTCTATCGCTGGGAGTGTTCATGTTATACGAGGGCATCAGactttggaagaaaaaaaagaggcatgCTTTGTCATCGCAGAAATCATCGCCTGCTTCTGACGATCAGACATTTATTATCACAGTGGGAGCAGACGCGGTCCACAACGAGAGCGTTCCTCTCACAAACCAACAGTGTGAAACAGAACAAAGCGGAAAACTCCCAGACTGCGTTCCAAGGGAGATCAAAATTCACGAGTTCTTCTACTTCGTGCTGGACGAGGTGCCCATCGGGCGATTCAAAGAGCTTGTACGACGGCTTGGTGTTTCTGAGCAGAACATTGACAGGGCCGACCAAGACCACAGGAACAGCAAAGATGCCCACTACCAGATGCTGAAGGTTTGGAGCGACAGCGGGAGCGGGGGAGGGAACAACGTTTTGCCCTGTCACCGCATCCAGATGTTCGTAGACACCCTGAAGGACATGTATTTGGTGAACTGTGCAGACAACATCGAGAACAGGTTTCTTTCACAGGACACAAGCGCTTCACACTGAGGCCAatagaagagaaagaagaaaagggCATTAATAGAGAACCTTCCGACGATTTCCATTGGATTCCTTTGAGAGTGGAAGCGCGTCTGCAGCTGTTTATGTCCTATTTCCAGTTGTTTGAAGGTTTCACACTAAATTTTTTCTATCTTCTGTgttatgtgtttatatgcagGCTTTTCTTGAATGTTTCTTGAATGAAGGTTGTGGAGTGGTTGGGGTTCTGGGTTGTAATTTTTCagatatatataatcatgtatATTCTGTTCAAATTCTCCTTATCATA

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 1A-like

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042742 defense response to bacterium biological_process

KEGG:

id description
K03158 TNFRSF1A, TNFR1, CD120a; tumor necrosis factor receptor superfamily member 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261747.1 True 1579 mRNA 0.45 10 8574027 8580269

Neighbor

gene id symbol gene type direction distance location
plekhg6 LOC107748912,LOC107685524,LOC107596731,LOC107550787,LOC107744705 coding downstream 2554 8558336 ~ 8571473 (-)
LOC122360899 LOC107596664,LOC107748923,LOC107685526,LOC106957056 coding downstream 29750 8540602 ~ 8544277 (-)
uts2r3 si:dkey-27n14.1,LOC107685608,LOC107749301,LOC107596760,LOC107678125,LOC107550807 coding downstream 98179 8474098 ~ 8475848 (-)
LOC122360918 stk31,LOC107678124,LOC107685609 coding downstream 107933 8454966 ~ 8466094 (-)
LOC122360915 NA coding downstream 120807 8452823 ~ 8453220 (-)
si:dkey-260g12.1 NA coding upstream 11966 8592235 ~ 8600129 (-)
iffo1b iffo1b,LOC107685521,LOC107596667,LOC107748876,LOC107550819,LOC107744683,LOC107699931 coding upstream 20439 8600708 ~ 8617241 (-)
opn9 LOC107685604,LOC107699923,LOC107596762,LOC107550785,LOC107744717 coding upstream 37362 8617631 ~ 8625519 (-)
gapdh gapdh,LOC107596669 coding upstream 45348 8625617 ~ 8630178 (-)
nop2 nop2,LOC107685519,LOC107699935,LOC107749104,LOC104957145 coding upstream 62889 8643158 ~ 8649731 (-)
G110753 NA non-coding downstream 22475 8547782 ~ 8551552 (-)
G110548 NA non-coding downstream 334851 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 338234 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 581160 7988950 ~ 7992867 (-)
LOC122360975 NA non-coding downstream 613652 7958881 ~ 7960375 (-)
G110773 NA non-coding upstream 9629 8589898 ~ 8590634 (-)
G110807 NA non-coding upstream 265256 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 420518 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 424269 9004538 ~ 9005206 (-)
G110849 NA non-coding upstream 427028 9007297 ~ 9007532 (-)
G110556 NA other downstream 257342 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 271782 8298789 ~ 8302245 (-)
G110544 NA other downstream 357432 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 481572 8082900 ~ 8092455 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other downstream 743277 7828215 ~ 7830750 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other upstream 53081 8633350 ~ 8636222 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 565661 9145930 ~ 9152183 (-)
G110974 NA other upstream 690702 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 1296942 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 2165307 10745576 ~ 10764305 (-)

Expression


Co-expression Network