gapdh (gapdh,LOC107596669)


Basic Information

Item Value
gene id gapdh
gene name gapdh,LOC107596669
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8625617 ~ 8630178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261749.1
AATTATGGCCTAAAGTCCGAGGGGGCGTGGCCAACGCCTCCGCACCAGATATAAATTAACCTCACGCTCGTAATCAGCCCACTCACACCAAGTGTAAGGACGGACAGAGGCTTCTCACAAACGAGGACAAGACCAAATCAGGCATCATGGTTAAAGTTGGTATCAACGGATTTGGCCGTATTGGGCGTCTGGTGACCCGTGCTGCTTTCCAGTCCAAGAAAGTAGAGATTGTGGCCATCAACGACCCATTCATTGACCTTGATTACATGGTTTACATGTTCAAGTATGACTCCACCCATGGAAATTATAAGGGTGAGGTTAAGGCTGAAGGTGGCAAGCTGGTCATTGACGGTCAAGCTATCACAGTCTTCAGCGAGAGGGATCCAGCCAACATTAAATGGGGTGATGCAGGTGCTAACTACGTTGTGGAGTCCACTGGCGTCTTCACCACCATTGAGAAGGCGTCTGCTCATCTTAAGGGTGGTGCCAAGAGAGTTATCATCTCTGCCCCCAGTGCTGATGCCCCCATGTTCGTCATGGGTGTCAACCATGAGAAATATGACAATTCCCTTAAAGTTGTCAGCAATGCTTCCTGCACCACCAACTGCTTGGCTCCCTTGGCCAAGGTCATCAATGATAACTTCGTCATCGTTGAAGGTCTTATGAGCACCGTTCATGCCATCACAGCCACACAGAAGACCGTGGACGGGCCCTCAGGAAAGCTGTGGAGAGATGGCCGCGGTGCCAGTCAGAACATTATCCCAGCCTCCACTGGGGCTGCCAAGGCTGTGGGCAAAGTCATTCCTGAGCTCAATGGCAAGCTTACTGGTATGGCCTTCCGTGTCCCTACCCCCAATGTGTCTGTGGTGGATCTGACCGTCCGTCTTGAGAAACCTGCCAAGTATGATGAGATCAAGAAAGTGGTTAAAGCTGCGGCTGATGGACCCATGAAGGGCATTCTGGGTTACACTGAGGACCAGGTGGTATCCACTGATTTCAATGGGGATATGCGTTCATCCATCTTTGATGCCGGTGCTGGCATTGCCCTCAATGATCACTTTGTCAAGCTGGTCACATGgtaTGACAATGAGTTTGGTTACAGCAACCGTGTATGTGACCTGATGGCACACATGTCCTCCAAGGAGTAAACATGACCtctttttgtggttttgatGTGACCCCACCACTCTCCCATCTGTTTTGGATGTTTGCACCACATGCCTGGAAGGAAATTACATGCTTGATTTGAAGAccaatgctatttttatatgaaaatactCTGTACTGTTTTGTGTGAGGTATAAAATGGATGTTGACTTCAATGGCTTCTGTCTGCTAACAACCTGTGACAGAATAAAGTCCTGTTTGTGAGAAATGGAAA

Function

symbol description
gapdh Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; microtubule binding activity; and peptidyl-cysteine S-nitrosylase activity. Predicted to be involved in several processes, including glycolytic process; peptidyl-cysteine S-trans-nitrosylation; and protein stabilization. Predicted to act upstream of or within apoptotic process and glucose metabolic process. Predicted to be located in cytoplasm; microtubule cytoskeleton; and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including cardiovascular system; integument; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).

NR:

description
glyceraldehyde 3-phosphate dehydrogenase

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261749.1 True 1381 mRNA 0.49 12 8625617 8630178

Neighbor

gene id symbol gene type direction distance location
opn9 LOC107685604,LOC107699923,LOC107596762,LOC107550785,LOC107744717 coding downstream 98 8617631 ~ 8625519 (-)
iffo1b iffo1b,LOC107685521,LOC107596667,LOC107748876,LOC107550819,LOC107744683,LOC107699931 coding downstream 8376 8600708 ~ 8617241 (-)
si:dkey-260g12.1 NA coding downstream 25488 8592235 ~ 8600129 (-)
tnfrsf1a LOC107685522,LOC107748890,LOC107596732 coding downstream 45348 8574027 ~ 8580269 (-)
plekhg6 LOC107748912,LOC107685524,LOC107596731,LOC107550787,LOC107744705 coding downstream 54144 8558336 ~ 8571473 (-)
nop2 nop2,LOC107685519,LOC107699935,LOC107749104,LOC104957145 coding upstream 12980 8643158 ~ 8649731 (-)
LOC122361375 NA coding upstream 17236 8647414 ~ 8647555 (-)
emg1 emg1,LOC107748869,LOC107748863,LOC107699927,LOC107744679 coding upstream 21778 8651956 ~ 8653563 (-)
kel LOC107569991,LOC107744677,LOC107699936 coding upstream 23655 8653833 ~ 8664175 (-)
zyx zyx,LOC107748852,LOC107569995,LOC107699937,LOC107596670 coding upstream 34388 8664566 ~ 8680965 (-)
G110773 NA non-coding downstream 34983 8589898 ~ 8590634 (-)
G110753 NA non-coding downstream 74065 8547782 ~ 8551552 (-)
G110548 NA non-coding downstream 386441 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 389824 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 632750 7988950 ~ 7992867 (-)
G110807 NA non-coding upstream 215347 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 370609 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 374360 9004538 ~ 9005206 (-)
G110849 NA non-coding upstream 377119 9007297 ~ 9007532 (-)
G110852 NA non-coding upstream 400957 9031135 ~ 9031449 (-)
G110556 NA other downstream 308932 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 323372 8298789 ~ 8302245 (-)
G110544 NA other downstream 409022 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 533162 8082900 ~ 8092455 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other downstream 794867 7828215 ~ 7830750 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other upstream 3172 8633350 ~ 8636222 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 515752 9145930 ~ 9152183 (-)
G110974 NA other upstream 640793 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 1247033 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 2115398 10745576 ~ 10764305 (-)

Expression


Co-expression Network