si:dkey-260g12.1


Basic Information

Item Value
gene id si:dkey-260g12.1
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8592235 ~ 8600129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261750.1
tcttcACAACAGCGAGCAGGTGAAGGacagtgtgagaaagagagggaggggaATGACAGGAAGACACAGCAGGTGAGGAAACAATGAGATGAAATGATCAGAACTGAACACAGACTGGCAGAAGACACAGAAATAGAGGCTCAAAGCATTCGGTGACATTTTGGATTAGACTGATAGTAAGATGCTTGTGACAGTGTTATCTGTAGCCTTGGTGATGCTGAGAGGTCACCTGATTTATGGGCTCCCTAtgGacggaaaaaagagaaattcgAGGGCCCTTTCAGAAGAGCTGTGTAATCCAGGATATTTCAAGTCAGGCAATTCGTGTGTTCAGTGCAAGCCCGGTTTCTACACCagtgagaaaaacagagagaattTTTGCCACCGCTGCTTCCAGAACTGCATATCTGAATTCAACATGGAGGTGGAGAAGAATTGCACGAGAACATCCGATGTAGTGTGTCGCTGTCGAGAGGGTTacgtgtgtgtgcccgatgaacACACACGCCTATGTGACAGCTGCGCTCCTGTCTCCATCACCATCCCATTCTCCACCTCTGCTGATGTCCCATCGTCCACTGCATCCACCACTACATCTACAGAGACAGCTGAGATTAAACTGGCTGGCAATAGGGTTACCGTGTGGGGTTTATGTGGAATAAGTTCTGTGATGCTATCCTTTATCATCCTTCTGCTGTTCCTCCGGTTCTGCaggaagaaagagaaggaatgttttaaacattTTGTCAGGCAGTGCTCGCTGGGTAATATAGAGaTGGACAGCGAGACTGCGCCTCCTACCAGCCAACCAGATAAGCAGCCCCAGGGCGTGCTGTCACATGGCAGCACGCCTACCAATCACAACACAGACTGCTCGtttcatcagccaatcagctcAGAGCACACTGTGCCTCCGGCTGGCAATTTAGGTCCTCTCCACATCTATGGTCCCCAGACGGTTTTTGTTAGTTTGCTCAATCAGTTTGGATGCGATGGCGGCGAGAAAAAACCACACGAGCTCCAAGAAGAATCGCTAAACAACATCAACGTGCCCTACCCTCGGTCTCCCCCCGTCCATCTGTCCGAGGAGGAACGCAGCGGTGATAACGATTTCATCTTCTTCCCATCTCAGGAGCAAGGGAAAGAGTGCCACATATCTAAAGAAGAGGCGCTGTGAGGGATAACGGGCCGCTTGTGTCCGTCTTCCTCCGTACTGCTCGAGAGTACCCAGTATTAAAACTCTAACCCTGGCGGGGGATTTCATCTCGAGAGCAACAGGCTGCGTTAGGGGAAGGCCTGGGTGTGTGACTAACAGTGAGGACGACATAACTGTTGCGTATGAGCTTGACAGTTGGTGCCAGCTTTGCAATATCACCCATAAAGTCGTTTTGTGCGTAACCACCGAATCTGAACCATCAGAACGGGAGAGGGATGCTGATGTTGACTGTCGATGCCAAAGGCTTTCACCTCTTACCACGGCTCAGTGACTCTCTGGAAGTGTttgaaagtgtttaaaacacTCAAGAAGACCAAAGATTTAAGCGccttgctgtatttatttgatgtaaatagTTATTAAACTCATTGTAGTTGCAATACGTGGTATAATTTCCTATCTATCGTCTATCTAATCTTCCGGGACATTTCGAGTctagagtatttttttatttatacttgtTATTAATTCTATTGcagatattaaaaacacaaagaagtTTTTTGTTCTCACACAGTTTATCGGTTAAGTCCCTGGTTAATGCTGTCAGCgttcttcctcttttctttgGCTTTTATGCGACTCTCATGATGGATTGTGCCATCAAAAAAGCCCTGACATTTTGATGGTGGTCTGGAAATGTCAACTTTTCTTCATTTAGAAGTAAATAAGCACAGCACAGGAACAGGCAGTATAGCTGTTGCGTGtcattatgtattatgttttacatttgctgtaatgcacttttttttttttacttgatatTAATtgtaaagtgcaataaaatcaataaagatttatttttggtaCGTT

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261750.1 True 2029 mRNA 0.45 9 8592235 8600129

Neighbor

gene id symbol gene type direction distance location
tnfrsf1a LOC107685522,LOC107748890,LOC107596732 coding downstream 11966 8574027 ~ 8580269 (-)
plekhg6 LOC107748912,LOC107685524,LOC107596731,LOC107550787,LOC107744705 coding downstream 20762 8558336 ~ 8571473 (-)
LOC122360899 LOC107596664,LOC107748923,LOC107685526,LOC106957056 coding downstream 47958 8540602 ~ 8544277 (-)
uts2r3 si:dkey-27n14.1,LOC107685608,LOC107749301,LOC107596760,LOC107678125,LOC107550807 coding downstream 116387 8474098 ~ 8475848 (-)
LOC122360918 stk31,LOC107678124,LOC107685609 coding downstream 126141 8454966 ~ 8466094 (-)
iffo1b iffo1b,LOC107685521,LOC107596667,LOC107748876,LOC107550819,LOC107744683,LOC107699931 coding upstream 579 8600708 ~ 8617241 (-)
opn9 LOC107685604,LOC107699923,LOC107596762,LOC107550785,LOC107744717 coding upstream 17502 8617631 ~ 8625519 (-)
gapdh gapdh,LOC107596669 coding upstream 25488 8625617 ~ 8630178 (-)
nop2 nop2,LOC107685519,LOC107699935,LOC107749104,LOC104957145 coding upstream 43029 8643158 ~ 8649731 (-)
LOC122361375 NA coding upstream 47285 8647414 ~ 8647555 (-)
G110773 NA non-coding downstream 1601 8589898 ~ 8590634 (-)
G110753 NA non-coding downstream 40683 8547782 ~ 8551552 (-)
G110548 NA non-coding downstream 353059 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 356442 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 599368 7988950 ~ 7992867 (-)
G110807 NA non-coding upstream 245396 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 400658 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 404409 9004538 ~ 9005206 (-)
G110849 NA non-coding upstream 407168 9007297 ~ 9007532 (-)
G110852 NA non-coding upstream 431006 9031135 ~ 9031449 (-)
G110556 NA other downstream 275550 8312265 ~ 8316685 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other downstream 289990 8298789 ~ 8302245 (-)
G110544 NA other downstream 375640 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 499780 8082900 ~ 8092455 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other downstream 761485 7828215 ~ 7830750 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other upstream 33221 8633350 ~ 8636222 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 545801 9145930 ~ 9152183 (-)
G110974 NA other upstream 670842 9270971 ~ 9272605 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other upstream 1277082 9877211 ~ 9902981 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 2145447 10745576 ~ 10764305 (-)

Expression


Co-expression Network