LOC122360914 (snx10b,LOC107743219,LOC107596759,LOC107685610,LOC107684554,LOC107744712,LOC108441519)


Basic Information

Item Value
gene id LOC122360914
gene name snx10b,LOC107743219,LOC107596759,LOC107685610,LOC107684554,LOC107744712,LOC108441519
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8296026 ~ 8298481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261753.1
attaattcctatgatttcaaatctgaatttttagcatcattgctCCATCACGACGCTTtacaaatcatttaatattatgaTAATAGAACGTTAAGAATTgtctaaaatagaaatattttgtattacagcaaaaatgctgaaaatgtttacttttttattttgatcttgttttatttatttttttacaggtctatatatttttgctgcttttttctattttaattccagtaatgaacatgtttttaattcCAGCTAAATGTAATAAACCCGTTGTTATCCGTGATATCAAGAGGTTTGAGAAGCCAATACATGAATAACTGCGTAGTTGTTTCAAACACGCAGGCGTTATGATTACGGTACCCATTTTTTCCAGCTGCTTTTTcgtgctctttttatttttatggcagCGCTAGTCTGCTCCGTCTCTGGTGGCTGGTAAAAATGAAGCACCGCTGTCCGTCAGAGACACCAAATGAGCTTGGATGTTTTTCCCCAGTCTACAGTTCCCATGAATCAGCCCCGGTTGGTCAACAAGCCCAATGTCTCATGAAAATACTTCCCTTTTTATTCttcccattttttttaaacctctgAGCACTGAGTACATGTGTCCTTGTCCAGTCTGAGTTTGTGAGCGTGTGCGTGAGGTATCCTCAAGCGTTCTTGGACTTATGCAGGAATTCACCGGCGTGTGGGTGAGGGATCCTCGCATCCAGAAAGAGGATTTCTGGCATGCTTACATGGATTATGAAATCTGTATACATACAAACAGTTTGGCCTTCACTAAGAAGAGTTCCTGCGTGCGGCGGAGATACAGCGAGTTCGTGTGGCTAAGAAAAAAGCTACAGGAAAATGCCATGCTCATAACCCATCTACCCAAACTTCCTCCAAAAAACCCGTTCTTCAGTCTCAACAATGCCAGAGAGATCGCCCGCATGGAAGGGCTCAGGAAATTTCTAGAAGAGGTGGTTCACAGCCCGGTGCTGCTTTCGGACAGCTGCTTGCATCTCTTCCTGCAGTCCCAGCTAAGCGTGAAGAAAATGGAGGCCTGCGCCAAAGGCCGGAGTCGCTACACTGTCTCTGAGGCCATCTGCAGTTTCGCCTCAGGAAACAAACGCTTTGAATCTCAGTCTGAAGACAGCATGGAAGAAGAGGACGATAACTGTGAATCAGACTGATGGACTATTTTCTGCTAAGACATTGCTGAGGAGCGTAACGTTCAACGCTGAAGATTACACGAGGAGACGAAGCAACGGGGAAAAAGTTACCATCATTGTTGCAGCGCTCTTACTCTCTGTATCGATGAATCTGTACTGATGAAGATAAcctaataaattcatttatttaaaccgCA

Function

symbol description
snx10b Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in endosome membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 8. Orthologous to human SNX10 (sorting nexin 10).

NR:

description
PREDICTED: sorting nexin-10B-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0010008 endosome membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261753.1 True 1354 mRNA 0.42 5 8296026 8298481

Neighbor

gene id symbol gene type direction distance location
LOC122360799 tmtopsa,LOC107573386,LOC107550426,LOC107653523 coding downstream 39489 8239331 ~ 8256537 (-)
adipoqb adipoqb,adipoq,LOC107681756,LOC107755695,LOC107566714,LOC100653481 coding downstream 95687 8195101 ~ 8200339 (-)
mpp7b LOC107681820 coding downstream 152072 8105226 ~ 8143954 (-)
LOC122360189 LOC107691296,LOC107550438,LOC107747520 coding downstream 221722 8067575 ~ 8074304 (-)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding downstream 242841 8005718 ~ 8053185 (-)
LOC122360896 pde11al,LOC107743218,LOC107684552,LOC103364058 coding upstream 43119 8341600 ~ 8363640 (-)
pals2a mpp6a,mpp6,LOC107749029,LOC107685533,LOC107596657,LOC107678134 coding upstream 136165 8434646 ~ 8451791 (-)
LOC122360915 NA coding upstream 154342 8452823 ~ 8453220 (-)
LOC122360918 stk31,LOC107678124,LOC107685609 coding upstream 156485 8454966 ~ 8466094 (-)
uts2r3 si:dkey-27n14.1,LOC107685608,LOC107749301,LOC107596760,LOC107678125,LOC107550807 coding upstream 175617 8474098 ~ 8475848 (-)
G110548 NA non-coding downstream 56850 8237758 ~ 8239176 (-)
G110546 NA non-coding downstream 60233 8234908 ~ 8235793 (-)
LOC122360778 NA non-coding downstream 303159 7988950 ~ 7992867 (-)
LOC122360975 NA non-coding downstream 335651 7958881 ~ 7960375 (-)
G110453 LOC107681784,LOC107708546,LOC107747514,LOC107566457,LOC107691124 non-coding downstream 406731 7887795 ~ 7889295 (-)
G110753 NA non-coding upstream 249301 8547782 ~ 8551552 (-)
G110773 NA non-coding upstream 291417 8589898 ~ 8590634 (-)
G110807 NA non-coding upstream 547044 8845525 ~ 8845993 (-)
G110836 NA non-coding upstream 702306 9000787 ~ 9001428 (-)
G110842 NA non-coding upstream 706057 9004538 ~ 9005206 (-)
G110544 NA other downstream 79431 8216029 ~ 8216595 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other downstream 203571 8082900 ~ 8092455 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other downstream 465276 7828215 ~ 7830750 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other downstream 677430 7441898 ~ 7618596 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other downstream 1094645 7195490 ~ 7201381 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other upstream 308 8298789 ~ 8302245 (-)
G110556 NA other upstream 13784 8312265 ~ 8316685 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other upstream 334869 8633350 ~ 8636222 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other upstream 847449 9145930 ~ 9152183 (-)
G110974 NA other upstream 972490 9270971 ~ 9272605 (-)

Expression


Co-expression Network