ccdc12 (ccdc12,LOC107743233,LOC107752847,LOC107581540)


Basic Information

Item Value
gene id ccdc12
gene name ccdc12,LOC107743233,LOC107752847,LOC107581540
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12491498 ~ 12497557 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261760.1
ACTGCATAATCGATAACAGATTCGTCGATCCGGCTACCCACGCTTTATTTTCACTATGGAGAAACCTGTGGGTTCTTTACAAGAGCAAgctttgaaaagaaaagaaagattaaaaGCTCTACGGGACCGGCAACTTCAAgGACAAGCATCTGAGGATGGAGAGCCTGAGAGAAAAAGAGCTCTGGAGGACTCCGAGACCGAGGATAGGCacagAGAGCTGAAGCTGAGGAATTACACTCCGGAGGACGAGGAGCTGAAGGAGCGACAGGTGCCCAAAGCAAAACCTGCATCAGTGGAGGACAAGGTCAAGGACCAGCTGGAAGCTGCAAACCCAGAGCCTGTGATTGAGGAAGTGGATCTGGCCAATCTTGCCCCCAGAAAACCAGACTGGGATCTAAAGAGGGATGTTGCCAAGAAGCTTGAGAAATTAGAGAGGCGAACACAGAAAGCCATTGCTGAACTTATACGTGAGCGGCTCAAGGGAAGTGAGGAAGAGCTGGCTGGAGCGGTCGGAGCAGTTGGCGTGGAAGAGGGAGACTCTGATTGAATCTGTTGAGAATGATGGTCACGCACAACCAGATTTTCAAGAAGTTTCCTCCTCAAATCCTCTTTACATGGCAGTGTGTGTTTCAAATGGATTTCTTATGCTGAGCGCAGCATAGCATATCATGCGATTAGaagtgtgagtgtttgtgtgtgagagcgagggagagggaaacaaaaagaaagaatgagaggaATACAggagtttttgtatttttatatagagTACACAAAGACGGCAacttcctttttattattattttgttgtttataagTAAACAgttctttcttttctaaattGTCTGTCTTTTTCCTTTCTGGTCCttatgataaaaacatttttcaatgtCAGTAcacttgttttaaaacaaaacctgaATGCTGATAAAGAAGGGCTAAATTCATATTTTCGTGTGGTATTTTTCTCATTAATATGAGAGTTCTAAAAGCAGACAGATTACAGAAAAGAATACAATATCATAATCGAGCAGAACAGTACAGATGAAACTGCAGTACATTATTCTGGTTTcaagatatttaaaacaaattagtgTGTACATGGGCTCAAGTCTCTTCAAGCACTTAATAAAATCAAGTACATTAAAGAAGAGTTAAA

Function

symbol description
ccdc12 Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human CCDC12 (coiled-coil domain containing 12).

NR:

description
coiled-coil domain-containing protein 12-like

GO: NA

KEGG:

id description
K12871 CCDC12; coiled-coil domain-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261760.1 True 1159 mRNA 0.41 7 12491498 12497557

Neighbor

gene id symbol gene type direction distance location
LOC122360109 NA coding downstream 69379 12419118 ~ 12422119 (-)
LOC122360649 NA coding downstream 94248 12392767 ~ 12397250 (-)
slc6a19b slc6a19b,LOC107743232,LOC107662664,LOC107685553,LOC107596751,LOC105905464 coding downstream 264549 12216856 ~ 12226949 (-)
si:ch211-254p10.2 LOC107685554,LOC107596717,LOC107752844,LOC102209663 coding downstream 277149 12208105 ~ 12214349 (-)
rapgef5b LOC107596719,LOC107685551,LOC107581543,LOC107728526,LOC107674937,LOC107743169 coding downstream 288410 12155770 ~ 12203088 (-)
setd2 LOC107743179,LOC107685560,LOC107752833,LOC107673014,LOC107581536,LOC107596709 coding upstream 80304 12577861 ~ 12599994 (-)
LOC122361014 mtbp,LOC107596625,LOC107685571,LOC107707175,LOC107673040 coding upstream 308671 12806228 ~ 12825561 (-)
col14a1a col14a1a,LOC107685600,LOC107707159,LOC107672958 coding upstream 341504 12839061 ~ 12944070 (-)
deptor deptor,LOC107685573,LOC107673035,LOC107596624,LOC107743215 coding upstream 450393 12947950 ~ 12975794 (-)
polr3c polr3c,LOC107685575,LOC107743190,LOC107673034,LOC107707173 coding upstream 545269 13042826 ~ 13048403 (-)
G111799 NA non-coding downstream 1378 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 3805 12486851 ~ 12487693 (-)
G111807 si:ch211-257p13.3,LOC107752836,LOC107581541,LOC107685558,LOC107596636,LOC107673049,LOC107743172 non-coding downstream 10523 12480724 ~ 12480975 (-)
G111806 NA non-coding downstream 11710 12479434 ~ 12479788 (-)
G111791 NA non-coding downstream 48885 12441953 ~ 12442613 (-)
G111860 NA non-coding upstream 60254 12557811 ~ 12611994 (-)
G111862 NA non-coding upstream 69648 12567205 ~ 12652406 (-)
G112229 NA non-coding upstream 527376 13024933 ~ 13026129 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 690362 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 716373 13213930 ~ 13227818 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 113049 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 624183 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1079721 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1104505 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1205066 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 1156503 13654060 ~ 13683909 (-)
G112478 NA other upstream 1736997 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2000706 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 2084922 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 2401625 14899182 ~ 14904907 (-)

Expression


Co-expression Network