s100t (LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416)


Basic Information

Item Value
gene id s100t
gene name LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14896221 ~ 14899047 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261772.1
TGGCATATGTGTATGGACACCTTTTGCTTAATGATGAATTAACACCTGTGCAGCAGTATCAGGTGTGACAGGACCACTTGTAGTCAGATGCtcacccaacacacacacacacacacctgagagatTATCAGCACCTCTAAAGACCCTTGGGTTGTTAGTAACTACATGTGTACCATGTAACCTTGTTTGGCCTGTAACATAATCAGTCCTCAGGCACCTGACCCCATTTCATCTTATGGCTTATGTGCCATTATGCTTATAATTGTAGAAAAGTGCATTAAGAAATGAACTGCAAATATATAgacttatatacttatatataaatgtgttggatagatatagatagaatTACACCATCAAGAACCTTGACCAATCTCTAAGAGTATATTGTCATCTCATTGTATATTCTTTAtcacataatgtaaataatacagaaattagtataccttttaaatatatatttatatgtataaatcatattttaaagcataactGCTGGTAAAGGAGCCTTTTTAGAGCTCAGCCGATGTTTATAGCGATGTTTGTGTGTAAGTCATCAATTACTGAGGATAAATCATTTAGTTCGGGGTGCTGACCTATCACGTCTCTAAAAGTTTAATGTGACAAGCACCAGTACATATAAATAACCTTTAGGATCAAACATATCTATTTACTCAAAAGCTCTTCTTTCAGGTAAGTCCACGTCTTCAGAGcatgtttatatacacaaatgtcACGCTGTAGCTTGAAAACATGACCAATGATATTTATTGACACAATGCAGTTcattgtaaatgatttttttaaagaaaattaatacaTTCAAATTTTGTTGAGATACACACAttatgcataaacacacattagtaaacattttaacaaccacaatgtttatatatatatatatatatatatatatatatatatattcatgattCACAAACTTAGCTAACAGAGTGTtgatcaataaaacaaaacatcaattatgtgtattgttttcattttctcaagTTACCCTCTAACGCAGAGaactttctctcttttaattACGACGATCATCATCGCATTTACACctttatataacacttttagTATTTTTCCTTACATTGTGAATGTGTAAACAGAGAGGGCAAGAGGTGGGAAAAAGGTAGGCAGAGACAAATGATGGATGGAAGAAGGGAGGAGTGTAAGGTATGATGGGAGGAGGACCATGTAGGTATATAAGATGCTGCTCATCGTCTCCCGTCTTCACCAGCATTCATCTCTCCTCAAGGAACAGAAGAGCAACAACCTTCTAACAACAAGAATGTCTAATATTCTCAACTCAGAGAATGCCTCCACTCTGGAGAGCGCCATGCAGCTGATGATCCAGACATTCCACAAGTACTCTGGAAACGAGGGAGACAAATATACTCTTAGCAGGCAGGAACTCAAAGAGATGCTAACGCAGGAACTGGGCAACTACCTTGGGAATGCACAGGATAAGGATGCCGTAGATAAAGTTATGGGAGACCTGGATTCAAACAACGACGGTGAGGTGGACTTCACGGAGTTCGTCATCCTCGTTGGTGCCCTCACTGTCGCCTGCAACGACTTCTTCCTCGAGTATCATGAAAAGGATGGAAAGAAGCCTGAAAAGAGTGATTAGAGTTGCATTTCTCTGAACAAAAGCCAACACATGACCAGCGAATGATGATGAGGGGGAAATGAGGGGAGAAGgggaatatgtgtgtgtgtgtgtgtgtgtatgaatctTCCTTACTGATATGATATTTTACTGATACTTTTTACTGATAAGTTTCACATCATCTCCGCATCCACATCCTGCATGCATGCAATCCTCGGTACACAAAATTTTTTCACGAGGCACATGTTTCCAGACCCCTGGACCTGTTAGAAGCATTGGGAATGAGATTGTGACATGGTCTTTGTTGAATATGTGAATATGtgtttcttcctttcttttgttttttaacaattggagttgtttatttgaaaataatctCTCCATATAACAATAAAGGGcagatttgaaattaaa

Function

NR:

description
protein S100-A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261772.1 True 2041 mRNA 0.37 3 14896221 14899047

Neighbor

gene id symbol gene type direction distance location
LOC122360979 LOC107673736,LOC107714679,LOC107723515,LOC107677031,LOC107582064,LOC107596123,LOC561423 coding downstream 149596 14727085 ~ 14746625 (-)
LOC122360089 NA coding downstream 176641 14717064 ~ 14719580 (-)
tuft1a LOC107582063,LOC107723549,LOC107714678,LOC107673742,LOC107594884 coding downstream 181255 14701898 ~ 14714966 (-)
si:dkey-92i15.4 LOC107714676,LOC107673754,LOC107594846,LOC107577098 coding downstream 199133 14687731 ~ 14697088 (-)
aqp10a aqp10a,LOC107673770,LOC107714675,LOC107596410 coding downstream 208053 14682828 ~ 14688168 (-)
pbxip1b LOC107714683,LOC107673634 coding upstream 14901 14913948 ~ 14924517 (-)
LOC122361105 LOC107582131 coding upstream 27245 14926292 ~ 14926896 (-)
shc1 shc1,LOC107714692,LOC107677023,LOC107723450 coding upstream 27990 14927037 ~ 14957235 (-)
si:dkey-247k7.2 NA coding upstream 247977 15147024 ~ 15150068 (-)
trim46a trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016 coding upstream 252697 15151744 ~ 15163625 (-)
G113034 NA non-coding downstream 3826 14892040 ~ 14892395 (-)
G112686 NA non-coding downstream 180730 14715216 ~ 14715491 (-)
G112659 NA non-coding downstream 242071 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding downstream 257889 14633214 ~ 14638332 (-)
G112612 NA non-coding downstream 568018 14327952 ~ 14328203 (-)
G113039 NA non-coding upstream 47548 14946595 ~ 14947384 (-)
G113073 NA non-coding upstream 211786 15110833 ~ 15197354 (-)
G113090 NA non-coding upstream 265950 15164997 ~ 15165440 (-)
G113092 s100a10b,LOC107714718,LOC107595024,LOC105891828 non-coding upstream 269326 15168373 ~ 15170070 (-)
G113125 NA non-coding upstream 408818 15307865 ~ 15308418 (-)
LOC122359961 riiad1 other downstream 308352 14582479 ~ 14587869 (-)
dicp3.3 NA other downstream 393085 14498263 ~ 14503136 (-)
G112478 NA other downstream 594602 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 1212312 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2517772 12363785 ~ 12378449 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 135 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 9573 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 71494 14970541 ~ 15015462 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 402827 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 466141 15365188 ~ 15375304 (-)

Expression


Co-expression Network