fbxl4 (fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759)


Basic Information

Item Value
gene id fbxl4
gene name fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23527088 ~ 23536822 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261851.1
GGTGAAGCGGATGTTTATATTCCGCACCAACAGTGAAGAATGGGCGAGCAATGACAGCAGAAGTGAGAGATGGATCgagaacacagaacacactcaGCACAACACTCCAACACACCATTGCATCGTCTGTCATGCATGCAGCTTGGCCTATAGCCTGTACTGTCTAGATCCTATCGCGCTACAGCGCAAGGAAGAGAAAAGGGCTGTGCTTCCTGAATCAAACCCAGTCCTGCTGCTCCATGTTTCCTATGCTAACCCTTTTGAGCATGTTTTACTATATCTGTCTGCGGCGGCGCTCCAGGAGCGGGACACGGAGCGAGGCGTTGGGTAGCCGGCGGGCAGTGGAGCTGGGCCAGCGTTCTGCGCTGCCTGTCACCGTTGAGGTCGAGCAGTATGGCAAAGAGGTCCTGGACTTCAGTTCTCACTACGGCAGCGAGAACAGCATGTCCTATACCATGTGGAATCTAGCGGGCGTACCTAACGTCTATCCCAGCTCAGGAGACTTCACCCAGACCGCTGTGTTCCGGACTTATGGAAGCTGGTGGGAGCAGTGCATCAGCTCCTGTCAACGGTTCCGTCGTACGCCGCCTAGTTTCCACAGCCAGGACTACCTGGAACTGGCCTTCGAGGAGCCCGTCTATCCCACAGCCGTGGAGGTGCTGGAGACCTACCACCCCGGGGCCATTGTCAAGATCCTAGCGTGCTCGCTCAACCCTTTCTCCCAGAACCCTCCTGCTGATGTGAGGTGGGAGGTTCTGTGGGCGGCAAGCCCAACAAAGCTGACCCCTCAGGCTCGACAGTTCTCCCCCAGCATCAAGCAGATCAATTTTGCAACCAACCTGTTGCGTCTGGAAGTGAACAGCTCCGTTTTGGAATACTACACGGAGCTGGATGCTGTGATCCTGCGAGGCGTTCGGGAAAGACCTATTCTGGCCCTCTATAAGATCCCTGTCATCGACATCAATGATCTGAGTGACAGTGAAGAGGAGATCAGTGATGCAGGAGGCCTCTGCTGCAGGTCGGCTGGAGAAAACCGGCACAACTTGGGGAACGGCTACTTTGATAGGCTCCCTTATGAGCTAATCCAACTGATCGTGAGTCACCTGCCCGTTCCGGACCTGTGCCGATTGGCTCAGAGCTGCAAGCTTTTTCACAAACACTGCTGCGACCCGCTGCAGTACATTCAGCTCAGCCTGCAGCCGTACTGGGCCCGTCTCACAGACGCCTCTCTGAGCCACCTGCAAAGCCGCTGCACCCTCCTGCAGAGACTGAACATGTCCTGGACGGGCAACCGTGGAGCCGTGACGGCCACTGGATTCTGCAGCTTTATGAAGGCCTGTGGGGTGAGTCTGGTGTGTTTGGAGCTGTCGTGCTGCCATTTCCTGACTGAAGCGTGTTTAGAAGTGATCGCCCAGACGTGTCCGTGCCTCCAGGAGCTCAATTTGGCTTCCTGTGACCGTCTGCAACCTCAGGCCTTCAATCACATCGCCAAACTCACTAATCTACGCAGACTCGTGCTGTACCGCACCAAAGTTGAGCAATCAGCCATATTGAGCATCCTCACCTTCTGCCCAGAGCTGAAGCACCTTAACGTGGGAAGCTGTGTCATGATTGAGGACTATGATGTGGTGGCGAGTATGCTGAGCGCACGCTGCCGTTCTCTGCGCTCCCTCGACCTGTGGCGCTGCAGGAACCTTAGCGAGCGCGGTCTGGCAGAGCTGGTTTCGGGCTGCAGGCTCCTGGAAGAGCTGGACCTGGGTTGGTGCTCCACGCTTCAGAGCAGCTCCGGCTGCTTCCAGCACTTGGCCCGCAGTTTACCCCGCCTACGCAAGCTCTTCCTCACCGCCAACCGCACCGTGTGTGACTCTGACCTGGAGGAGCTGGCCGCTAACTGCAGCGCTCTGGAGCACCTTGATATACTGGgcaCACGGATGGTGAGCCCTGCCTCTCTGCGGAAGTTACTGCAGAGTTGTCCTCAGCTAAAGCTGTTGGACGTGTCCTTCTGCTCGCAGGTCGACTCTCGCTTCGTCCAGGAGCTCAGTGGCCTTTTCCCAAAGGTGTCCATCAAGAAGAGTTTCACTCAGTAAAACTCTGTGGGGTCCCGAGCAGGAGCAGCTTTACGGGGACGGTTTTTAAGACCCCAGGGAGAAGTGTGGCGCATGGTGCTGTGAACTTTCTGCCTTGAACTGCACGGAGCTGTGA

Function

symbol description
fbxl4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 13. Orthologous to human FBXL4 (F-box and leucine rich repeat protein 4).

NR:

description
F-box/LRR-repeat protein 4-like isoform X2

GO: NA

KEGG:

id description
K10270 FBXL4; F-box and leucine-rich repeat protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261851.1 True 2202 mRNA 0.56 9 23527088 23536822

Neighbor

gene id symbol gene type direction distance location
mms22l mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675 coding downstream 123458 23389423 ~ 23403630 (-)
calhm6 fam26f,LOC107700692,LOC107552824,LOC107716816 coding downstream 158135 23367501 ~ 23368953 (-)
calhm5.1 LOC107704861,LOC107716815,LOC107587898,LOC107711741,LOC107552825 coding downstream 159715 23362337 ~ 23367373 (-)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695,LOC107552826 coding downstream 165714 23358473 ~ 23361374 (-)
kpna5 kpna5,LOC107704934,LOC107716841,LOC107552832,LOC107711738 coding downstream 179074 23339451 ~ 23348014 (-)
faxcb faxcb,LOC107587769,LOC107700756,LOC107711729,LOC107704942,LOC107716849,LOC107552822 coding upstream 19953 23556775 ~ 23566844 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding upstream 30236 23567058 ~ 23572317 (-)
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding upstream 36149 23572971 ~ 23579881 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding upstream 140168 23676990 ~ 23736637 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding upstream 215514 23752336 ~ 23787702 (-)
G115669 NA non-coding downstream 199195 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 337438 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 359148 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 449218 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 453638 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 279075 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 280078 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 283697 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 507938 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 540809 24077631 ~ 24077867 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 2706 23519808 ~ 23524382 (-)
G115554 NA other downstream 593121 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 625901 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1437996 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1558553 21964855 ~ 21968535 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 46171 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 131243 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 780660 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 827818 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 877404 24414226 ~ 24473365 (-)

Expression


Co-expression Network