G11107


Basic Information

Item Value
gene id G11107
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16667118 ~ 16667947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU12242
CGCCACACACGCTTGACACCATCTGAACCAAATAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTCCAGTAATCCATGTCCTTAGTCTGCTTGTCTTCAGCAAACTGTTTGCGGGCTTTCTTGTGCATCATCTTTAGAAGAGTCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCGTATGGTCTGAGCACTGACAGGCTGACCCCCCACCCCTTCAACCTCTGCAGCAATGCTGGCAGCACTCATACGTCTATTTCCCAAACACAACCTCTGGATATGACGCTGAGCACGTGCACTCAACTTCTTTGGTCGACCATGGCGAGGCCAGTTCTGAGTGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCGTGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACAGCATCTTTATGTAGAGCAACAATTCTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTGAACACACCTGCTCCCCATTCACACCTGAGACCTTGTAACACTAACGAGTCACATGACACCGGGGAGAGAAAATTGGGTTAATTGGGCCCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU12242 True 657 TUCP 0.49 2 16667118 16667947

Neighbor

gene id symbol gene type direction distance location
CI01000000_16639394_16651227 NA coding downstream 15891 16639394 ~ 16651227 (-)
CI01000000_16628234_16631045 THOC3 coding downstream 35304 16627697 ~ 16631814 (-)
CI01000000_16583129_16583311 NA coding downstream 83807 16582968 ~ 16583471 (-)
CI01000000_16395230_16423976 GLRA1 coding downstream 243142 16394132 ~ 16423976 (-)
CI01000000_16354158_16360016 NA coding downstream 306905 16353959 ~ 16360213 (-)
CI01000000_16813179_16823209 NA coding upstream 144906 16812853 ~ 16823302 (-)
CI01000000_16946558_16965306 PPARGC1B coding upstream 278510 16946457 ~ 16965306 (-)
CI01000000_16992347_17023908 NA coding upstream 323661 16991608 ~ 17024074 (-)
CI01000000_17034650_17052531 ARHGEF37 coding upstream 366692 17034639 ~ 17052531 (-)
CI01000000_17139308_17145015 NA coding upstream 471235 17139182 ~ 17145409 (-)
G11086 NA non-coding downstream 81453 16585444 ~ 16585665 (-)
G10872 NA non-coding downstream 139351 16527298 ~ 16527767 (-)
G10870 NA non-coding downstream 141557 16525222 ~ 16525561 (-)
G10850 NA non-coding downstream 157834 16509052 ~ 16509284 (-)
G11108 NA non-coding upstream 268 16668215 ~ 16668422 (-)
G11121 NA non-coding upstream 40073 16708020 ~ 16708393 (-)
G11173 NA non-coding upstream 156639 16824586 ~ 16825343 (-)
G11175 NA non-coding upstream 161283 16829230 ~ 16829465 (-)
G11176 NA non-coding upstream 162607 16830554 ~ 16830832 (-)
G10672 NA other downstream 435992 16226287 ~ 16231126 (-)
CI01000000_14200000_14436182 TENM2 other downstream 2168524 14200000 ~ 14436253 (-)
G9602 NA other downstream 2320584 14341002 ~ 14346534 (-)
G9036 NA other downstream 2940028 13726800 ~ 13727090 (-)

Expression


Co-expression Network