LOC122360982 (rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585)


Basic Information

Item Value
gene id LOC122360982
gene name rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25294224 ~ 25299861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261865.1
CTGACGTCAGATCCAGTCATCCGATCCGTCATCATCAGTTTTGATGCAAAAGGGGAAGTTGGGAGGAACCGAGAGGAAGATCTGGGAGTGACCGTTTGAGAAGCACCTCTTGACTTCAGTACAGGAGATTGGGGCTTAGGGTCATGGCAGGAAGAGGTGGAGCAACAAGACCTAACGGGCCGAACGCCGGCAACAAAATCTGTCAGTTCAAACTAGTGCTCTTGGGGGAGTCTGCTGTGGGGAAGTCAAGTCTAGTCCTTCGTTTTGTAAAAGGACAGTTTCACGAGTTTCAGGAAAGCACAATAGGCGCTGCCTTCTTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCCGGCCAGGAACGCTACCACAGTCTGGCCCCAATGTATTACAGAGGAGCACAGGCTGCCATAGTGGTGTATGACATTACAAATGAAGAATCATTTGCACGTGCAAAAAACTGGGTGAAAGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAgctttggctggaaacaaggcAGACCTTGCCAACAAGAGAGCGCTGGACTTTCAGGATGCACAGTCATATGCAGATGACAACAGTTTGCTCTTTATGGAAACATCGGCAAAGACTTCAATGAACGTGAATGAGATTTTTATGGCCATTGCAAAGAAACTACCCAAGAATGAGCCCCAGCCTGCAGGTGCCAACACAGGACGCAACAGAGGTGTGGATCTAACAGAAACGGCACAGCCTGCGAAAGGTCCCTGCTGTAGCAACTAAACAGCGATGGTCCTCACCTCCTAACCAACCGCATCACATCTGGACATGGGGCTCCTCCTTCCAAACCTCGCTCCTTGGATTAGCTAAAGACTCTGTATAGCTGTGTttctaatactttttttttttattttttatttttaagaaaaaaaaaatgtaaatcagcaGTCTACTGGATGCATGTATCACTACAAAtgctaaatacacattttaacttaattcaGCAGGAGAACAAACCGGATGaaagcgcgagagagagagagagagagagagagagagtgaaatattgagtgtgtttgtatgagTTTAGTATGTGGAACTGATTATAACCTTATAACCAGGCCCAGGCGCAATCTGCAGATTAAAACAATGTGTTAAACAAAGCTATCCTTAGTGGTAACTGTAAGCATAATCAAATTTAGCAAACTAATAAACCTCATGAATGCATTACA
>XM_043261866.1
CTGACGTCAGATCCAGTCATCCGATCCGTCATCATCAGTTTTGATGCAAAAGGGGAAGTTGGGAGGAACCGAGAGGAAGATCTGGGAGTGACCGTTTGAGAAGCACCTCTTGACTTCAGTACAGGAGATTGGGGCTTAGGGTCATGGCAGGAAGAGGTGGAGCAACAAGACCTAACGGGCCGAACGCCGGCAACAAAATCTGTCAGTTCAAACTAGTGCTCTTGGGGGAGTCTGCTGTGGGGAAGTCAAGTCTAGTCCTTCGTTTTGTAAAAGGACAGTTTCACGAGTTTCAGGAAAGCACAATAGGCGCTGCCTTCTTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCCGGCCAGGAACGCTACCACAGTCTGGCCCCAATGTATTACAGAGGAGCACAGGCTGCCATAGTGGTGTATGACATTACAAATGAAGATGCACAGTCATATGCAGATGACAACAGTTTGCTCTTTATGGAAACATCGGCAAAGACTTCAATGAACGTGAATGAGATTTTTATGGCCATTGCAAAGAAACTACCCAAGAATGAGCCCCAGCCTGCAGGTGCCAACACAGGACGCAACAGAGGTGTGGATCTAACAGAAACGGCACAGCCTGCGAAAGGTCCCTGCTGTAGCAACTAAACAGCGATGGTCCTCACCTCCTAACCAACCGCATCACATCTGGACATGGGGCTCCTCCTTCCAAACCTCGCTCCTTGGATTAGCTAAAGACTCTGTATAGCTGTGTttctaatactttttttttttattttttatttttaagaaaaaaaaaatgtaaatcagcaGTCTACTGGATGCATGTATCACTACAAAtgctaaatacacattttaacttaattcaGCAGGAGAACAAACCGGATGaaagcgcgagagagagagagagagagagagagagagtgaaatattgagtgtgtttgtatgagTTTAGTATGTGGAACTGATTATAACCTTATAACCAGGCCCAGGCGCAATCTGCAGATTAAAACAATGTGTTAAACAAAGCTATCCTTAGTGGTAACTGTAAGCATAATCAAATTTAGCAAACTAATAAACCTCATGAATGCATTACA

Function

symbol description
rab5ab Predicted to enable GTPase activity. Acts upstream of or within several processes, including Spemann organizer formation; epiboly involved in gastrulation with mouth forming second; and nodal signaling pathway. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB5A (RAB5A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-5A isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261865.1 True 1243 mRNA 0.44 6 25294224 25299861
XM_043261866.1 False 1120 mRNA 0.44 5 25294224 25299861

Neighbor

gene id symbol gene type direction distance location
LOC122360869 LOC107688204,LOC107569797,LOC107592108,LOC107716984 coding downstream 62222 25226157 ~ 25232002 (-)
LOC122360868 efhb,LOC107671426 coding downstream 88016 25200951 ~ 25206208 (-)
pnp4b pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC108437351 coding downstream 93324 25194401 ~ 25200900 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding downstream 103475 25179830 ~ 25190749 (-)
pik3r4 pik3r4,LOC107556101,LOC107755706,LOC107588487,LOC107705468 coding downstream 121763 25161763 ~ 25172461 (-)
si:dkey-82o10.4 NA coding upstream 14193 25314054 ~ 25319078 (-)
znf385d LOC107671428,LOC107592108,LOC107688204,LOC107716984,LOC107569797 coding upstream 268670 25568531 ~ 25627099 (-)
nek10 nek10,LOC107728980,LOC107552505 coding upstream 413050 25712911 ~ 25728665 (-)
lim2.5 lim2.5,lim2,LOC102215845,LOC100699404 coding upstream 431332 25731193 ~ 25733582 (-)
vsig10l vsig10l,LOC107707630 coding upstream 435662 25735523 ~ 25745044 (-)
G116242 NA non-coding downstream 115617 25177452 ~ 25178607 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding downstream 211628 25079267 ~ 25082596 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding downstream 458860 24835099 ~ 24835364 (-)
G116179 rab42 non-coding downstream 460266 24833536 ~ 24833958 (-)
G116174 NA non-coding downstream 470814 24821501 ~ 24823410 (-)
G116264 NA non-coding upstream 394248 25694109 ~ 25695357 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding upstream 404839 25704700 ~ 25706796 (-)
G116282 NA non-coding upstream 476875 25776736 ~ 25778404 (-)
G116351 NA non-coding upstream 720664 26020525 ~ 26073006 (-)
G116350 NA non-coding upstream 762430 26062291 ~ 26069534 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 820859 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 924658 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 954436 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1618879 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 1684383 23582993 ~ 23609841 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 364858 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1079811 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1121857 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1507259 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1510456 26810317 ~ 26812974 (-)

Expression


Co-expression Network