dnase2 (dnase2,LOC107666875,LOC107665653,LOC107592150,LOC107592517)


Basic Information

Item Value
gene id dnase2
gene name dnase2,LOC107666875,LOC107665653,LOC107592150,LOC107592517
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19243942 ~ 19249649 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261885.1
CAGCCTTTAAGATTAAAGATAAATTCCATTCTATGCACTTGTTCTATGAAGAAACGAATGGACCTGCTGCACGTGACAGAGTAAGGAATAGAAGTTTCGCTCAGCGATGGACTGAAACGATCATTTTCACTCTGTACTCCGTTGGGTTTCACTTCCATCATGTTGCTTCTTGTTCTGCTCCTCCTTCGTGCTTCAGAAGGAGCTTCTTCCTCCATCTCGTGTTATGATGATCAGGGGAAACCTGTAGACTGGTTTTATTTGTACAAGCTCCCGCATCTTTCTCATGAGCCTGTGCAGGAGGGACTGAAGTATCTTTTCATGGATGGAGAAAgtgagggatggatggatgggaaGACTTTAGTTAATGACAGTCAAAGTGCTGTGGGGCGCACAGTAGGGCCTTTATATGAGAGTGATGATGTTGGATACGTTTTATATAATGATCAGCCACCGCAACAAGAGAAGCTTTTTGGAGATGCATCTAGGTCTTGTGGCCACACCAAAGGAGTTGTTGTCTTTGATAAACAGCAGGGCTTCTGGTTGGTCCACAGCACACCTCATTTCCCCCCTCCTAAATCACAGGGACAGTTTTCATATCCCAGCTCTGGCATAAGTAATGGACAGAACTTCATCTGTGTCACATATCCTTTAGAGCGTTTTCAGACAATAGGTGAGCAGCTGAAGATCAATCAGCCTCACATATACGACTGCAGCATCCCTGCTTCACTGGCCGCTGCTGTACCTGCTGTGGCCCAGCTCTGTAAACACACACTGGGCAGATGGGACAACACTTCCTCCTCACCGACCAATCGCAGTATCTCACTCCAATCGCTGGCCGGAACAGAGTTCATTAGCTTTGCAAAAGGTGCATCATTTGCCAATGACCTGTATCACTCCTGGGTTGCGCCTGCTCTTCAGTCCGACCTGCTGGTTCAGTTCTGGCGTCGCTCCTCGGGCGTCCTGCACTCGGACTGTTCTCCAAGCTGGAAAGTCCTCAACGTAGACCTCATTTCCCCAGGCCAGAGCGTCACGTTCAAAGCTACGGAGGATCACTCGAAGTGGGCCGTCAGCGCTGGAAGCGGGACGTCCGGCGGCTGGGTCTGTGTGGGAGATATCAACCGCGACGAGGCGGAGGAGAAGAGAGGCGGCGGGACGGTGTGCCGGCAGGATGCTGCGGTGTGGAAGGCCTATCGCTCGGCCGCCCTGCAGTGTGAGACCTGCGAGAGAGAAGTGCAGACGTGCGACAGTTCTGCTCGGTATCGCTGATGAAGCGGGACACAGCAGAAAGAACAACTAAATCAGGGTCATGCGGAAGGACCGCCTGTATAGCTGTCAAACAGGTATGGTTATTAGGTCAAATGCTTTCGGGGAATAATATGGGaggtaaataatttaaatgcaaatgcaagaCAAACAGATACATTTATGATTGATATCTTAAAACGGGCtataaatttgatttgattttatttttttcttttgctgtgaTTACatcattctttttaaataaagagtaTGTGAAGagaaggtgaagtgtgtaatttgtgCAGCATTTTTACACGCATTACCTTGAACCTCAGGAAGCCAGAAGTGCATTATTGGGCTGGAATGTGTATGGTGGACgtgtttttaatctttcagCTTTTGTTGCTGTATTACATTGAGGAAATAAAAGCACTTCATGTGTCTGTAA

Function

symbol description
dnase2 Predicted to enable deoxyribonuclease II activity. Predicted to be involved in apoptotic DNA fragmentation. Predicted to act upstream of or within DNA metabolic process. Orthologous to human DNASE2 (deoxyribonuclease 2, lysosomal).

NR:

description
PREDICTED: deoxyribonuclease-2-alpha

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0004531 deoxyribonuclease II activity molecular_function

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261885.1 True 1693 mRNA 0.47 7 19243942 19249649

Neighbor

gene id symbol gene type direction distance location
phf1 phf1,LOC107592451,LOC107665654,LOC107592148,LOC107726675,LOC108433894 coding downstream 32756 19197851 ~ 19211186 (-)
syngap1b syngap1b,syngap1,LOC107592452,LOC107726670,LOC107688248,LOC108433893,LOC106605281,LOC106581894,LOC101464846,LOC102301914,LOC102194363 coding downstream 48513 19095755 ~ 19195429 (-)
smg5 smg5,LOC107728478,LOC107688247,LOC107726659,LOC107671430 coding downstream 149204 19078953 ~ 19094738 (-)
paqr6 paqr6,LOC107728479,LOC107688246,LOC107726661,LOC107671432,LOC107592147 coding downstream 169132 19056157 ~ 19074810 (-)
rbm8a rbm8a,LOC107671476,LOC107592456,LOC107592145 coding downstream 263316 18977536 ~ 18980626 (-)
LOC122359968 LOC107728465,LOC107666778,LOC107726656,LOC107592540,LOC107592151,LOC107665645,LOC107665648 coding upstream 9675 19259324 ~ 19261794 (-)
upk1a upk1a,LOC107728482,LOC107666813,LOC107592444,LOC107686548,LOC107709649 coding upstream 226169 19475818 ~ 19479474 (-)
zgc:101716 zgc:101716,LOC107686482,LOC107556972,LOC107728463,LOC107709702,LOC107666748,LOC107592507 coding upstream 238108 19487757 ~ 19490733 (-)
si:dkey-122a22.2 si:dkey-122a22.2,LOC107719144,LOC107666836,LOC107592440,LOC107686774,LOC107556959 coding upstream 616077 19865726 ~ 19886663 (-)
sqlea sqlea,sqle,LOC107666801,LOC107556968,LOC107714342,LOC107686341,LOC107592438 coding upstream 761646 20011295 ~ 20020232 (-)
G114399 NA non-coding downstream 180771 18992862 ~ 19063171 (-)
G114401 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 non-coding downstream 202176 19012655 ~ 19041766 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding downstream 256016 18985403 ~ 18987926 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding downstream 503113 18739754 ~ 18740829 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding downstream 555547 18687166 ~ 18688395 (-)
G114458 NA non-coding upstream 30779 19280428 ~ 19283527 (-)
G114462 NA non-coding upstream 43344 19292993 ~ 19294087 (-)
G114433 LOC107666765,LOC107728460 non-coding upstream 55857 19305506 ~ 19307497 (-)
G114468 NA non-coding upstream 58269 19307918 ~ 19308512 (-)
G114438 LOC107728464,LOC107666853,LOC107728451 non-coding upstream 86228 19335877 ~ 19343773 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 422832 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 545535 18684573 ~ 18698407 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other downstream 572668 18669607 ~ 18671274 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other downstream 593333 18649519 ~ 18650609 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other downstream 723655 18492626 ~ 18520287 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other upstream 167313 19416962 ~ 19421094 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other upstream 346783 19596432 ~ 19657724 (-)
G114715 NA other upstream 917146 20166795 ~ 20177758 (-)
G114793 NA other upstream 1192316 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 1386476 20636125 ~ 20650937 (-)

Expression


Co-expression Network