flcn (flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420)


Basic Information

Item Value
gene id flcn
gene name flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13162930 ~ 13170984 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261894.1
TCACATGACACATAAGAAAGACTGGAAAGGATGGACTTaacaatgtaaacaaattaaaaacaataattaccGTCGTGTTTCAGCGACGATTTAGTAAACCACATCGGTGAGGATAGTGTACTATTTATGCTGAATGGAAATAAACTACATCGTCGGCAACATTGACAACCATGCAGAACCTGTAGACAGTTGATATTGTCAATACTCCATTGCAATGTCTTGTTCTTGTTAGTTTACTGGTACCAGTCGGCGCTATAGCTCTACCCAGCTGAAAAAGATGAATGCTTTAGTTGCCCTTTGCCACTTCTGTGAACTCCATGGCCCGCGCACGCTATTCTGTACAGAGGCCGTCCACCCTCCATCCCCGTCCCCTCCGCAGCCTGGTTCAGCTATTCCTGGGGACAGGGACCGAGAGGCGGACCGAGAGGGCGAAGGGCTCACCATGAGAGCCAACAGCTCTGCGACGCAGAGAGCTGACATGTGTGAAGGTTGCCGGTCCCTACCTGCGTCTCACCCAGGCTTCGTGAGTGTGGACAGTGAGACAGGAATCCGCTATCTGAGCCACCAACACCCTCGCCAGCCACAGCTCTTCAGCGTCGTGCGACAAGCATGTGTGCGCAGCCTGAGCTGTGAgGTTTGTCCTGGTCGAGAGGGGCCCATCTTCTTTGGAGACGAACAGCACGGTTTCGTTTTCTCTCATACGTTTTTCATCAAAGACAGCCTGGCACGGGGCTTCCAGCGCTGGTACAGCATTGTCGTGGTAGCCATGGACAGAATCTACCTCATCAACTCCTGGCCATTCTTGTTGCGCCACCTACGACTGACCATTCAGAGTCTACAGAACACAGCACTCAAGGTGTTTGACagtgagcagtgtgtgtgtcctcagaGGGCTGTGCGTATGAACAGCGCCTTCTCTCCGGCAGTGTTCCCTCAGCGCAGCGGAAATGCAGCCCGCTCCCTCACATCCCTAACCCAGCACCCCAACCTGTGGGCTAGTCTGCACTCCTCATTCAGCTGGTTGCTGAAAGCTTGTGGCAGTCGATTGACGGAGAAGCTTTTAGAGGGGGCGCCCACAGAAGACACGCTTGTTCTCATTGAAAGACAAACTGAGCAAGAGGAAGAGATGAGCGTCTGGGATGGTGCTGAAGGGGGCGGGTCTAACCCACAgcccagccaatcagagagtgTGCAAGCTAAAGATTTTCAGTTTGATGACGGAAGACAAGAGGACGTTCTTGGGCCAAAGTTCAAATCACTGAGACATTTAAGACAgGTCCTGGGTGCCAGTGATTTCCGACAGCTGGCATGGCATGTACTCATGGGAAATCAAGTCATTTGGAGAGGTGCAGACCCATGTCTTATCCAGTCAGCTTTCAGTGTGCTGAAGGCTTTGCTTCCAGTCGGCTGTGTCCGAGCAGTTCAGTACAGTCCTCACTACGAGGAAGCGTATCGATGCAACTTCCTTGGCCTTAGCCCAGATGTACCAATCCCAGCCCACGTTAGCTCTTCAGAGTTTTCTGTGCTGGTGGATGTACTTAATGTTGAGCGTGGTTGCGTAAATCCTGTCACGGATGATGACATTCTCTCACTATATCAGTTCAACATTAGCAGTGCAAACACACAAGCAACAGATAAAGgtcCAACTCTGTTGAATAAGATTGAAGTGGCTCTTTCTAATGAGAATTTGTCGGTGGAGGTGGTCTCTCTCTGCTTGCTTTGCCTGAAAGAGGAGTGGATGAaCAAAGTAAAAGTGTTGTTTAAGTTCTCCAAGGTGGACGGCAGAGGTAAAGAGGACACTCAAAAGGTTTTAGCTCTGCTGGGGGCCACGGGGCCCGGGGAAGAGGACAATGTGCGTCTTCTTAAGTTTTGGATGACAGGACTCAGCAAGCTCTACAAGAGCCATCTAATGACAGCAGTCAGAGGTGGAGAGAGAACTCTGAgccagtgagagagagagagagagaaaggggacAATGGACTCATTGCTAGAGTTAGATGaaaggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgtgtctgtgtgtcaatTTACGGGAAAAGGGGGCCAGGCCtgagaatgtgtttttctgCGTGGTACAGAGAGAAAGTAAAAGCCATCATTGATATAGGAGCCTCAAAAACGTTTACTTACACATGTGCTTTTAAATGGAATGTAGTTTTACCGTCATGCATAGACATGTCCATTTTCTATCTTTTCGCTATGTGTCTAATGGAGCACATGGTCCACTGACTTTGTGGGAACTAGGCAGAGTATCAGTTGACATGATACTGTTTGAGGCTTGTCTATTGTAATTCATCATAATTATTTTCCATTTGACTTGTCTGAGAGAGAACTTGTATTTTATGAGCAATTTAATTTATCCTTATTTGATcactttgattaaataaatggcTCTCACTTTAATCTTACACATGCTAAATAAAGACTATGTGTTGCTCGTAAACCAAAGTAATTAAGTACTATCATTTATTACTGCAATGTGGTTATACCAGATACTGACCCCTATCAGCATCATATGGTAGGGTAGAAATAGCTTTTGAGGGATATGCCTGTAATTGTTGCCATGAAAGAGTTTCTGGATTATGTAGAAATCCCCTCAATCCCATTATAGTTTTTACAGCTTGTTTCAATGTACTACTGGACTTAAAGTCATGCAATAAACACTGTGCAAACATGCAAGTCCATTCCAAGCA

Function

symbol description
flcn Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; positive regulation of GTPase activity; and positive regulation of signal transduction. Predicted to be located in several cellular components, including cilium; lysosomal membrane; and microtubule cytoskeleton. Predicted to be active in cytosol. Is expressed in brain; hatching gland; pectoral fin bud; retina; and tail bud. Used to study Birt-Hogg-Dube syndrome. Human ortholog(s) of this gene implicated in Birt-Hogg-Dube syndrome; colorectal cancer; primary spontaneous pneumothorax; and renal cell carcinoma. Orthologous to human FLCN (folliculin).

NR:

description
folliculin-like

GO: NA

KEGG:

id description
K09594 FLCN, BHD; folliculin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261894.1 True 2739 mRNA 0.47 12 13162930 13170984

Neighbor

gene id symbol gene type direction distance location
zgc:174888 LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913 coding downstream 146 13158802 ~ 13162784 (-)
grwd1 grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021 coding downstream 5057 13152349 ~ 13157873 (-)
atg12 atg12,LOC107692547,LOC107673043 coding downstream 16516 13144049 ~ 13146414 (-)
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding downstream 19019 13136647 ~ 13143911 (-)
LOC122359945 NA coding downstream 36728 13124348 ~ 13126202 (-)
josd2 josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995 coding upstream 30398 13201382 ~ 13204597 (-)
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding upstream 135044 13306028 ~ 13319763 (-)
cacng6b cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398 coding upstream 302491 13473475 ~ 13485710 (-)
u2af2a LOC107692567,LOC107672971,LOC107724853,LOC107598390 coding upstream 316367 13487351 ~ 13494251 (-)
epn1a epn1,LOC107672968,LOC107598387,LOC107724817,LOC107744298 coding upstream 335647 13506631 ~ 13516502 (-)
G112229 NA non-coding downstream 136801 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 510524 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 550936 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 672810 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 675237 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 16935 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 42946 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 46219 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 118221 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 260160 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 784481 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1295615 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1751153 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1775937 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1876498 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 483076 13654060 ~ 13683909 (-)
G112478 NA other upstream 1063570 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1327279 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1411495 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1728198 14899182 ~ 14904907 (-)

Expression


Co-expression Network